Salmo salar (Atlantic salmon): 106568870 Help Entry 106568870         CDS       T04363                                  Name (RefSeq) 5'-3' exoribonuclease 1-like   KO K12618   5'-3' exoribonuclease 1 [EC:3.1.13.-] Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa03008   Ribosome biogenesis in eukaryotes sasa03018   RNA degradation Brite KEGG Orthology (KO) [BR:sasa00001]  09120 Genetic Information Processing   09122 Translation    03008 Ribosome biogenesis in eukaryotes     106568870   09123 Folding, sorting and degradation    03018 RNA degradation     106568870  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sasa03019]     106568870    03009 Ribosome biogenesis [BR:sasa03009]     106568870    03016 Transfer RNA biogenesis [BR:sasa03016]     106568870    03036 Chromosome and associated proteins [BR:sasa03036]     106568870 Messenger RNA biogenesis [BR:sasa03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     Common to processing body (P body) and stress granule      106568870   mRNA degradation factors    5'-3' decay     5' exonucleases      106568870 Ribosome biogenesis [BR:sasa03009]  Eukaryotic type   Pre-60S particles    RNases     106568870 Transfer RNA biogenesis [BR:sasa03016]  Eukaryotic type   tRNA degradation factors    Rapid tRNA decay (RTD) pathway factors     106568870 Chromosome and associated proteins [BR:sasa03036]  Eukaryotic type   Gene silencing    piRNA pathway     106568870 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer Motif Other DBs NCBI-GeneID:  106568870 NCBI-ProteinID:  XP_013995097 UniProt:  A0A1S3LVY0 LinkDB All DBs Position ssa14:complement(16438737..16475484) Genome browser AA seq 1698 aa AA seqDB search MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE VLPSEARFDSNCITPGTDFMARLQEQLKYFVNSKLSTDNAWKGVNVYLSGHETPGEGEHK IMEFIRRENSEPGHDPNTRHCLYGLDADLMMLGLTSHEPHFSLLREEVRFGGKKNQKRIT APEETTFHLLHLSLFREYIDYEFSEVKNKISFEYDLERIIDDWILMGFLVGNDFIPHLPH LHINQDALPLLYRTYISVLPTLGGYLNENGHLNLGNFEKYLEKLSEFDREHFNEVFVDLK WFESKVGNKYLNEAAGLAAEEAHSKDARKKDLDSLRLTTLDDGKDRAPGRGFEEDGEEED MFEAEFRQYKRTYYMTKMGVEVVSEEFLANQALCYVEGIQWILHYYYHGVQSWSWYYPHH YAPFLSDVRNIAHLKLTFDMGKPFMPFQQLLGVLPAASKDLLPESYRHLMTSENSSIIEY YPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPYNDHMTKAEKARNRHTECAVYSYD AELDYPYTSTLPDLFPNIMHCHVRVTPIPMDAWHVSLSHVGRSDNSSQLYFLGFPTLQHI RHKFYKKKHGVVVFQQSSRGENMMLEITRSKEEPVCGDVAALVLGCSVFVNWPHLEEARV VAVSDGESKFSLEELAGVQKLYDRDSPPPTKVTYLSDKEQKDWVKDVQGITEHFSKRKGI VVNVTAVVLYAQLLTGRKYVPGQSGQVHLEKQWSKQIMPFAYQTIVKDIKAFDSSSTRFQ TLEELFPPTTTVFMVGNPYYGTMGEVQESSDVIKEGRVWVVFTVPCEPPMEALIQNQHKY CVKYSPGYVLASRLGITSYLVSRFSGSIFVGRGSKKNPHGEQKANVGLNLKFNKKNEEVP GYTKRTEKEWLYSDAVEELMSEYLDRFSEVFDLVSRNSHDDVFYEDDIWPAEYQNGAEKV KEITSWLKTHPVADVARASCDLQILDKAIVERIEEEVVKAKVKKSNEKVRVTVKPHLLFR PLEQQHGVVPDPDAEYHLFDRVVNVRESFSVPLGLRGTVIGIKAADREAEVLYEVVFDEE FAGGLTIRCAAGRGYRLPPCALINLSHGGRVEQGFHKLTAVVKPQPASSHQHNKGQMVGL NHSPRSPFISTQQQNGRQNILRADTQGNKNSAHKASQKPKPKGKDEEFSNVWQSLQSSGM PQKPPAHWQQDNSGKSAWGTGSPGKEGQFQGQQGRNQPQSQQPQPPKPGPTGSIRLLKRN EDVNSLFPAQNATKKQTEFEELIANLKISKGNESTPPPPAKEPTSQTEEPLSPQSFAMKG TLALKEMLNIGAAPDSTSPVSFNTQQQNKRRPTKKLAARMGDSVLPAAPAVAVPPLQSPQ PSSIIPSVASELTRICMGLGMAPPDFTFMRSRQGLLVYQVKLSSGLVVQGPQCQSENEAK EKAALFALQRLVSVNSVGSGFPLPPPMFSGVGQIRGPPMGPVPNIFGQSGGLLMPPQGYG PLHWGMPLPPHQGQPFYGGTFPGARPQAPSVPIGSHNQFVPLQVTKKRVSSVEKPQEFCN AAHKARNQAPGSEFPSHSQPSLSPAPSTPPKTAQAAGTPSTPQTPRQNPSGQGHTPGSAS KRKHRKLAVNFEAAKVQE NT seq 5097 nt NT seq  +upstreamnt  +downstreamnt atgggagtgccgaaattctaccgatggatttctgaaagatacccttgtctgagtgaagtt gtcaaggaacatcagatcccagagtttgacaacctctacctggatatgaatggcatcatc caccagtgctcccaccccaacgacgaggacgtccacttccgtatctcggaggagaagatc tttgcggacatcttccactacctggaggtgctgttcaggatcatcaagcccaggaaggtg ttcttcatggccgtggacggagtggctccccgggccaagatgaaccagcagagaggcagg agattcaggtcggccaaagaagcagaggacaagataaagaaagcccttgagaaaggagag gtcctaccctctgaggcccgctttgactccaactgcatcacacctgggacggacttcatg gccaggctacaggagcagctcaagtactttgtcaacagcaaactatccacagataatgcc tggaaaggagtcaacgtctacctttccgggcacgagactccaggagaaggagaacacaag atcatggagtttatccgcagggaaaactctgagccaggccacgacccaaacacacgccac tgtctctatggcctggacgctgacctgatgatgttaggtctgaccagccacgagccacac ttctccctactcagagaagaggtccgctttggagggaagaaaaaccagaagagaataaca gctccagaggagacaaccttccatctactgcacctgtcactatttagggagtacatagac tacgagttctctgaagttaagaacaagatctcgtttgagtacgacctggagcgaatcatc gatgactggatcctaatgggcttcctggtgggaaatgacttcatccctcatcttcctcat cttcacatcaaccaagacgccctgcctctcctctaccgcacctacatcagtgtgctgccg acgctgggagggtacttgaatgagaacggccacctgaacctgggcaactttgagaagtac ctggagaaactgtccgagtttgacagggagcacttcaacgaggtgtttgtggatctcaag tggtttgagagtaaggtgggcaacaagtacctgaacgaggccgcgggactggcagcagag gaggctcacagcaaggacgccaggaagaaagacctggactctctgcgtctaactactctg gatgacgggaaggacagagcccctggtagaggttttgaggaggatggtgaagaagaggac atgtttgaggcagagttcagacagtataaacgcacctactacatgaccaagatgggagtg gaggtggtctcagaagagtttctagcaaatcaggcgttgtgctatgtggagggaatccag tggatcctgcattactattaccatggagtccagtcctggagctggtattaccctcaccac tacgccccgttcctgtcagatgtgaggaacatagcccatctgaagttgacctttgacatg ggcaagcctttcatgcccttccagcaactactgggagtcctgcccgctgccagcaaagac ctgcttcccgagagctacaggcacctgatgacatcagagaattctagcatcattgagtat taccctctggacttcaagacggacctcaacgggaaacagcaggagtgggaggctgtggtg ctcatccccttcatcgacgagagatgtttgctcgctgcgatggagccttataacgatcac atgaccaaggctgagaaggcccgtaaccgccacacagagtgtgctgtgtacagctacgac gctgagctagactacccttacacctccaccctgcctgacctgttccccaacatcatgcac tgccatgtcagggtgacaccgattcccatggacgcttggcacgtgtcgttgagccacgtg gggcgcagcgacaacagcagccagctgtacttcctcggcttccccaccctgcagcacatc agacacaagttctataagaagaagcacggagtggtggtgttccagcagagcagccgagga gagaacatgatgctggagatcacacgtagcaaagaggaacccgtgtgtggcgatgtggcg gccctggtcctgggttgctctgtgtttgtcaactggccccatctagaggaggccagggtg gtagcagtgtctgacggggagagcaagttctccctggaggagctggcgggagtgcagaag ctgtatgaccgggactctcctccccccaccaaggtcacctacctcagtgacaaggagcag aaggactgggtgaaggatgtccagggcatcactgagcatttcagtaagcgtaagggcatc gtggtgaatgtgacggcggtggtgttgtatgcccagctgctgacaggcaggaagtatgta cctgggcagagcggacaggtgcacctggagaaacagtggtccaagcagataatgcccttc gcctaccagaccatcgtcaaggatatcaaggcctttgactcgtcgtcgactcgcttccag accctggaagagctgtttcccccgacgaccacagtgttcatggtggggaacccctactac ggaaccatgggagaggtgcaggagtctagtgacgtcatcaaagagggacgagtgtgggtg gtgttcacggtgccctgtgaaccaccgatggaagccttaatacagaaccagcataaatac tgtgtgaagtacagtcccggctacgttctggcctctcgcctcggcatcaccagctacctc gtctccagattctccggcagcatcttcgtcggcagaggatccaagaagaatccccatggg gagcagaaggctaacgtgggtctgaacctgaagttcaataagaagaatgaggaggtgcca ggttacaccaagagaactgagaaggagtggctctactctgacgctgtggaggagctgatg tctgagtacctggataggttctctgaggtgtttgacctggtgtccaggaacagtcacgac gatgtcttctacgaggacgacatctggcccgcggagtaccagaacggcgcggagaaggtg aaggagatcacttcctggttgaagacccacccagtcgccgacgtcgcccgcgcgtcatgt gacctgcagatcctggacaaggccatcgtggagcggatcgaggaggaggtggtgaaggct aaggtgaagaagagcaacgagaaagtacgtgttactgtgaagccacatttgctcttcagg cccttagagcagcagcacggtgtggtccctgacccggatgcagagtaccacctgtttgac cgggtggtcaacgtcagagagagcttctctgtccccctcggcctcaggggaaccgtcatc ggcatcaaggcagctgatcgggaggctgaggtgttgtatgaggttgttttcgatgaagag tttgctggtggactgactatcaggtgtgcggcgggccgtggctacaggctgcccccctgt gccttaattaacctgagccacgggggccgtgtagagcagggcttccacaaactgactgcc gtcgtcaagccccagcctgcctcctcccatcagcacaacaaaggacagatggtcggtctg aaccactcaccgcgatcacccttcatatccacacagcagcagaacggcagacagaacatt ctcagggcagacactcagggcaacaaaaactctgcacacaaagcgagccagaaaccgaaa cctaagggtaaagatgaggagttcagtaacgtgtggcagtctctgcagagctctggaatg ccccagaaaccaccagctcactggcaacaagacaattcgggtaagtctgcctggggtaca gggtctcccgggaaggaagggcagttccaagggcaacaaggcaggaaccaaccccagagt caacaaccgcaacctcccaaacctggtcctacaggaagtatcagactcctcaagagaaac gaagatgtcaattctctgtttcctgctcagaacgctacaaagaagcagacagagttcgag gagttgatcgccaacctgaagatctccaagggcaacgagtcaactccaccccctccagcc aaagagcccacgagccaaacagaggagccgctttctccgcagtcatttgctatgaaggga actctggccctgaaggagatgctaaacattggcgccgcccctgactccactagtcccgtc tccttcaacacacagcagcagaacaagagacgacccaccaagaaactggcggcgaggatg ggcgactctgtgttacccgcggccccagcagtagcagtccctcccctgcagtccccccag ccctcctccatcatccccagtgtggcctcagagcttaccaggatctgtatgggcctgggt atggccccgcctgacttcaccttcatgcgcagcagacagggtctgctggtgtatcaggtg aagctctccagtggtctggtggtccaaggtccccagtgtcagtccgaaaacgaagccaaa gagaaagcagctctttttgccctgcagcgccttgtgagtgtgaattcagtgggttctggg ttcccccttccaccgcctatgttctctggagtcggacagataaggggaccgcccatggga cccgtccctaacatattcggtcaatcgggtggtctgttgatgcctcctcaggggtatggt cccctacactggggcatgcccctcccgcctcaccagggccagcccttctacgggggcacc ttccctggcgcccggccccaggcaccctccgtccccatcggctcacataaccagtttgtc cccctgcaggtaactaagaagcgcgtgtcctcggtcgagaagccccaggaattctgcaac gcggctcacaaggcgaggaaccaagccccgggcagcgaattcccgtctcactcccaaccc tccctatccccagccccctccacacccccaaagaccgcccaggcagcggggaccccatcc acaccccaaacgccacgacagaacccctcgggccaaggccacacccccggctccgcctcc aagaggaaacacaggaaactggcggtaaacttcgaggcagccaaagtccaagaataa

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