Salmo salar (Atlantic salmon): 106575126
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Entry
106575126 CDS
T04363
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
106575126 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106575126 (lig4)
Enzymes [BR:
sasa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
106575126 (lig4)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
106575126 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
DUF4607
Motif
Other DBs
NCBI-GeneID:
106575126
NCBI-ProteinID:
XP_014006819
UniProt:
A0A1S3MUH5
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All DBs
Position
ssa17:1620208..1624563
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AA seq
914 aa
AA seq
DB search
MEGTSKSESAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLHDFIDSWRKFHAALH
KDNPTTTDSFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHLDAAELYNVTTDLNKVCRQLHDPSVS
LSEVSIGLFFAFKPMLAAVANMRQVEKQMGNSNFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNVFKPHVFNCILDGEMMAYNPTADTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNDRKFGNETLKVRHDNLQTVFTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGTERPEVYIDPCNSVIIQVKAAEIVSSDMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHLRINDNDEPEKKKSKSLSAAKPKKAVGVIDHFKSQDLSGV
TKETDMFEDVEFCVMNGNEAHPKAELEKAVARCGGIVVQNPGPDTYCVIAAVENMRVKNL
ISSDQHDLVWAAWLLECLDRKQVVPWQPCHMIHMSPSTKEQFAKEYDCYGDSYFVDTDEQ
QLREVFGRIGRAVTLTAQCIAKLEERYSWDDLPTSMFRPFRVYMDRCTDIGDPKSIVPAT
CLDTRALEFRFHGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIVRESWVTES
IKAGFLRNDNDYLV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacctcaaaaagcgaatctgctgctccccagagctctgtcgctgctcaagtt
ccatttcttcacctgtgcaccacgcttgaaaaaatacagaagaccaaactcagaccagac
aaatcaaagtttctccatgacttcatagactcctggaggaagttccatgcggccctccac
aaagacaaccctaccaccacagactctttctacccggccatgcgtctcatagtcccctcg
ttcgaaagggagcgcatggcctatggcattaaagagagtatgttagccaagctctacata
gacgtcttgggtctccccaagaacggaccggaagccaacaaactgttgaattaccgcacc
cccaccacatctcagggggaggcgggtgacttcgctcttatgacctactttgtgttgaag
aaacgctgcacaagccagggcaacctcaccatcagagaagtcaacgactttctggactcg
gtggccatcaacaatgccggtaagcagaaggacctggtgaagaagagcctgctgcacctt
atcacccagagcacggcactggagcagaagtggcttatccgcatgatcctgaaggacatg
aagctgggggtcagcaaagagaccgtgctccaggtgttccacttagatgcggccgagctc
tacaacgtcaccacagacctaaacaaggtgtgccggcagctccacgacccctctgtgtcc
ctcagcgaagtgtccattggcctgttctttgccttcaaacctatgctggccgccgtggcc
aacatgcgccaggtggagaagcagatgggaaacagcaacttcttcatagagaccaagctg
gatggagagcgcatccagctgcacaaagatggagacgtctacaagtacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcgccgctagagggctccctgacgcctttc
atccacaatgtcttcaagccccacgtattcaattgcatcctggatggggagatgatggcg
tacaaccccactgctgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggatgactccgagctgcagacgtgcttttgcgttttcgatgtacttcttgtgaacgac
cgcaagtttggcaacgagacgttgaaggtgcgccacgacaaccttcagactgtcttcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggccaaaactatgcaagaggtg
gtgaacgccctcaatgaagccattgacaacagagaagagggcatcatggtgaaagatccc
tcatccgtctacaagcccgataaacgaggtgagggctggctcaagataaagccggagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggagaggtggcatgatgtctcattttctcgttgcggttgccgaagctccgaagcctgga
gagaaaccctccgtcttccacacgctctgtcgcattggttccggctacaccatgaaggag
ctgtatgacttggggctgaagctggccaagcactggaaagtctaccggaagaacgaccct
ccggcctctattctgtgtgggacggagagaccagaagtctacattgacccatgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgacatgtacaaaaccaactgc
actctacgcttccccagaatcgagaagatccgggaggataaagagtggcaccagtgcatg
accctagctgagctcgatcagtttcgcaacaaggcgtccgggaagttgttctcgcgccac
ctccgtatcaatgacaatgacgagcctgaaaagaagaagagcaagtcgctgtcagcggcc
aagcccaagaaagctgtcggcgtcatcgaccacttcaagtcccaggacctatctggcgtc
accaaggagacggacatgttcgaggacgtggagttctgtgttatgaatggcaacgaggcg
caccccaaggcggagctggagaaagcagtggcccgatgtggcggtattgtagtccagaac
ccgggaccggacacctactgtgtgatcgccgctgtggagaacatgcgtgtgaagaacctg
atctcttcagaccagcacgacttggtgtgggctgcctggctgctggagtgcctagacagg
aagcaggtggtgccatggcaaccgtgtcacatgatacacatgtcgccctccaccaaggag
cagtttgccaaggaatacgactgctacggagacagctacttcgtggacacggacgagcag
cagctgagggaagtcttcggtcggattggcagagcggtcactttgacggcacagtgcatc
gctaagttggaggaacgctacagctgggacgacctccccactagcatgttcagacctttc
agggtctatatggacagatgcacagacataggagaccctaaaagcatcgtaccagcaact
tgtctggacacgcgggctctggaattccgcttccacggagggacagtagtgcagaagctc
gaggaaggggtctctcatgtcatagtggtggaggaaacaagagtgttggctttaagaacc
ctcagacgactctttaccaaaaagtttaagattgttagagagtcatgggtaacagagtct
atcaaagcagggtttttgcggaatgacaatgactacctagtgtga
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