Streptomyces calvus: CD934_04465
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Entry
CD934_04465 CDS
T06819
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sast
Streptomyces calvus
Pathway
sast03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sast00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CD934_04465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sast03400
]
CD934_04465
Enzymes [BR:
sast01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CD934_04465
DNA repair and recombination proteins [BR:
sast03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CD934_04465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QDI68007
UniProt:
A0A514JL08
LinkDB
All DBs
Position
complement(1091122..1092048)
Genome browser
AA seq
308 aa
AA seq
DB search
MSDGGARTVRAGRRSVQVHRPDKVLFPGGADAAAYTKGDLVDYHRAVAPYMLPHLRGRPL
MLDRRPDGVDGPAFMQKNTPDAYPDWITRAEVAKEGGTVTHTVCDDTATLLHLVDQASIT
LHRWLSRTRRIDRPDRLVFDLDPQGDDFEAVREAARLLGGLLDELRLPSAPMTTGSRGLH
IVVPLSGEHDFDDVRAFARDVAETLAAAHPDRLTTAVRKKDRGDRLYLDVQRNAYAQTAV
APYTVRALPGAPVATPFPWDRLDDPDLHARRWTVADAVEQARSDPWAALPRRGRALGPAR
RRLAALRG
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacggcggtgcgcgcaccgtacgggccggccgccgctccgtgcaggtccaccgc
ccggacaaggtgctcttcccgggcggcgcggacgccgcggcgtacaccaagggcgacctc
gtcgactaccaccgggcggtcgccccgtacatgctgccgcacctgcggggccgtccgctg
atgctggaccgccgcccggacggcgtcgacgggccggcgttcatgcagaagaacaccccg
gacgcctaccccgactggatcacccgcgccgaggtcgccaaggagggcggcaccgtcacg
cacaccgtgtgcgacgacaccgccacccttctccatctggtcgaccaggcgagcatcacc
ctgcaccgctggctgtcccgcacccgccggatcgaccggccggaccggctggtcttcgac
ctcgacccgcagggcgacgacttcgaggccgtgcgggaggcggcgcggctgctcggcggg
ctgctggacgagctgaggctgccctcggccccgatgaccaccggctcccgcggactgcac
atcgtggtgccgctgagcggggagcacgacttcgacgacgtgcgggccttcgcccgcgac
gtcgccgagacgctcgccgcggcccaccccgaccggctcaccacggccgtccgcaagaag
gaccgcggcgaccggctctacctcgatgtgcagcgcaacgcctacgcgcagaccgccgtc
gccccctacaccgtccgcgccctgcccggcgcgcccgtcgccaccccgttcccctgggac
cggctggacgatccggacctgcacgcccggcggtggaccgtcgccgacgccgtcgagcag
gcgcgcagcgacccgtgggcggctctgccgcgccgcggacgcgccctggggcccgcgcgc
cgccggctggcggcgctgcgcggctga
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