Streptomyces atratus: C5746_10860
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Entry
C5746_10860 CDS
T07374
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sata
Streptomyces atratus
Brite
KEGG Orthology (KO) [BR:
sata00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sata03019
]
C5746_10860 (hrpB)
Enzymes [BR:
sata01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C5746_10860 (hrpB)
Messenger RNA biogenesis [BR:
sata03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C5746_10860 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_25
AAA_19
AAA_22
HA2_N
AAA_30
AAA_11
NTPase_1
ResIII
nSTAND3
AAA
Motif
Other DBs
NCBI-ProteinID:
AXE77348
UniProt:
A0A2Z5JAG5
LinkDB
All DBs
Position
2397327..2399819
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AA seq
830 aa
AA seq
DB search
MIRTDALDQLPVRTAVPALERALDRRGVAVLCAPPGTGKTTLVPLVLAGLTGGGPVRRVV
VAEPRRIAARAAARRMAWLIGEQAGGRVGFTVRGERVVGPRTVVEVVTTGVLLQRLQRDQ
ELAGVDAVIIDECHERHLDADTVAAFLLDVREAIRPDLRLVAASATTDAEGWARLLGDAP
VVEAQGVSHPVEVVWAPPAGPVRPPHGMRVDPALLTHVASTVRRALAEREGDVLCFLPGV
GEIGRVAAQLAGVAAEVLQVHGRAPAAVQDAVLAGSSGSRRVVLATSVAESSLTVPGVRV
VVDSGLAREPRTDHARGLSALTTVRASQAAGRQRAGRAGREAPGAVYRCWEQAEDGRLAR
FPSPEIKVADLAAFALQAACWGDPDASGLALLDPPPAGAMGAAREVLTAVGAVDADGRVT
DRGVRMSRLGLHPRLARALLDGAAEVGGRRAAEVVALLSEEPPRAYGDDLAAALRTARRG
GDGYAARWRQEVRRLSSSVKDVGGACGPDDGAVGLVAALAFPERVARARGEGAFLMVSGT
GAELRDESGLRSAPWLAVAVADRPAHAASARVRLAAVIDEDTARTAAGHLRFAGEEVRWA
GGDVVARRVERLGAVELSVRPLKEPAPELVREALIEGLRREGLGLLRRTRETEQLRDRLA
FLHRTLGAPWPDVSDGALLDRTEEWMEPELSRARRRSDLARIDAGQALRRLLPWATGEAA
RLDELAPERIEVPSGSLIRVEYGGAQPVLAVKLQELFGLQETPRVAGVPVLVHLLSPAGR
PAAVTADLASFWRDGYRAVRAELRGRYPKHPWPQDPTTVEATRFTKRARR
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgtaccgacgccctggaccagttgcccgtacgcaccgctgtgcccgccctggag
cgggccctcgaccgccgcggcgtcgcggtgctgtgcgcaccgcccggcaccggcaagacg
accctcgtaccgctggtcctggccggtctgaccgggggtggcccggtgcgcagggtggtg
gtcgccgagccgcggcgcatcgcggcgcgggcggcggcacgccggatggcgtggctcatc
ggtgagcaggccggcgggcgggtgggcttcacggtccgcggggagcgggtggtggggccc
cgcaccgtggtggaggtggtgaccaccggggtgctgctccagcggctgcagcgcgaccag
gagctggccggggtcgatgcggtgatcatcgacgagtgccatgagcggcatctggacgcg
gacacggtcgccgcgttccttctcgatgtgcgggaggcgatccggcccgatctgcggctg
gtcgccgcgtccgcgacgacggacgcggagggctgggcacggctgctgggggatgctccg
gtggtggaggcgcagggtgtttcgcatccggtggaggtggtctgggccccgcccgccggg
ccggtgcggccgccgcacgggatgcgggtcgatccggcgttgctgacgcatgtcgcctcg
acggtgcgccgggcgctcgccgaacgggagggcgatgtgctttgtttcctgcccggtgtc
ggcgagatcggacgggtcgcggcgcagctggcgggggtggccgccgaggtgctccaggta
cacgggcgggctccggcggcggtgcaggacgctgtgctggccgggtcgtccggcagtcgg
cgggtggtactggcgacctcggtggcggagtcgtccctgacggtgcccggggtgcgggtc
gtggtcgactcggggctggccagggagccgcgtacggatcacgcccgggggctgagcgcg
ctgacgacagtacgggcgtcgcaggcggcggggaggcagcgggccggccgggccgggcgt
gaggcgccgggggcggtgtaccggtgctgggagcaggcggaggacgggcggctggcgcgg
tttccgtccccggagatcaaggtcgcggatctggcggcgttcgcgttgcaggcagcgtgc
tggggcgatccggacgcgtctgggctggcgctgctcgatccgccgcccgcgggtgcgatg
ggcgcggcacgcgaggtgctgacggcggtcggtgcggtggacgccgacgggcgggtgacc
gaccggggcgtacggatgtcccggctcggcctgcatccgcggctggcgcgggccctgctg
gacggcgctgccgaggtcggcggccgccgggcggccgaggtggtggcgctgctgagcgag
gagccgccgcgcgcgtacggggatgatctggcggccgcgctgcgtaccgcccggcggggc
ggggacggctatgcggcacgttggcggcaggaggtccggcggctgtcctcgtcggtcaag
gacgtgggtggggcttgtggtccggacgatggagccgtcggtctggtggccgcgctggcg
ttcccggagcgggtggcgcgggcccggggcgagggggcgttcctgatggtgtcgggtacg
ggtgcggagctgcgggacgagtcggggctgcgcagcgcgccgtggctggcggtagcggtc
gccgaccggcccgcgcacgcggcgtccgcgcgggtgcggctcgccgccgtcatcgacgag
gacacggcgcggacggccgccgggcatctgcggttcgcgggcgaggaggtccgctgggcc
ggtggcgatgtggtggcccgcagggtggagcggctgggtgccgtcgagctgtcggtgcgc
ccgctgaaggagccggcgcccgagttggtgcgcgaggcgctgatcgagggtctgcggcgc
gaagggctcgggctgctgcgccggacgcgtgagaccgaacagctgcgggatcggctcgcc
tttctgcaccggacgttgggtgcgccctggccggatgtgtcggacggtgcgctgctggac
cgtaccgaggagtggatggagcccgagttgtcgcgggcgcggcggcgctccgatctcgcg
cggatcgacgcggggcaggcgttgcggcggctgctgccgtgggcgaccggtgaggcggcc
cggctggacgagctggcgccggagcggatcgaggtgccgagcggctcccttatcagggtg
gagtacggcggggcgcagcccgtactcgcggtgaagctccaggagctgttcggcctgcag
gagaccccgagggtggccggggtgccggtgctggtccatctcctctcccccgccggccgt
cccgcagccgtcaccgcggatctggcgtcgttctggcgggacggctaccgggccgtgcgt
gcggagttgcgcggccggtatccgaagcatccgtggccacaggaccccacgacggtggag
gcgacccggttcacgaagagggcccggcggtag
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