Sinomonas atrocyanea: SA2016_0617
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Entry
SA2016_0617 CDS
T04286
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
satk
Sinomonas atrocyanea
Pathway
satk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
satk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SA2016_0617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
satk03400
]
SA2016_0617
Enzymes [BR:
satk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SA2016_0617
DNA repair and recombination proteins [BR:
satk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SA2016_0617
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AMM31309
UniProt:
A0A126ZVV5
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All DBs
Position
complement(634041..636218)
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AA seq
725 aa
AA seq
DB search
MADSEILRVDGPDGVREVKLSSPDKVLWPVTDGAAPVTKRDLADYLVTVAAPFLRLNGDR
PMTLQRFPEGIGGEEFFSKRPPRGAPGYLRTVTCTYPSRRRHDQLVFDEPAALAWAAQMG
TVTFHPWPVRTANLDNPDELRIDLDPQPGRTFADAVVAAQALREVMAEAGLTAFAKTSGN
RGVHVYARIRPTHEFQDVRHGVIGIARELERRLPELVTTAWWKEERGERVFVDFNQANRD
RTIAAAYSPRPLPHAPVSTPLTWDELADADPRDFTVRTVPGLLAERECPWAGIDGTAADV
AGALELWERDLERGLGELNFPPDYPKMPGEPPRVPPSRRKADRADAEYMAPKAERDAEWG
TAIAPPYGPMLAKPVKKLPEGEFLYEPKWDGFRAIIWRSGDRVEIGSRNALPMTRYFPEL
VTAFVENLPDHSVIDGEIILVDPESGDRLDFDTLQQRIHPAASRIAKLSAATPASFVAFD
LLALGHDNYVERPFRERRAALEEALKDAEPPVYLTNATRDPAVALEWFSAFEGAGLDGIV
AKPLDELYAEDKRVMSKLKHERTADCVVAGYRLYKDEPDAIGSLLLGLHDDQGKLHSVGV
VGAFPMARRRELFTELQPLVTTFDGHPWASAQPAEEAPDNRDQSIPRTPTAAAHSRWNAK
KDLSFVPLRPERVAEVRYDHTEGDRFRHTAQWVRWREDRSPASCTYSQLEEPVRYDLSSV
LDGDQ
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggcggactccgagatcctgcgcgtggacggccccgacggtgtgcgggaggtcaagctg
agcagcccggacaaggtgctctggcccgtcaccgatggcgcggctccggtcaccaagcgc
gacctggcagactacctggtcacggtggcggcgccgttcctccgcctcaacggcgaccgc
cccatgacgctgcagcgcttccctgaggggatcggcggcgaggagttcttctccaagcgg
ccgccgcggggcgcgccgggctacctgaggacggtgacgtgcacctatccgtcacgccgg
cgccacgaccagctcgtgttcgacgagcctgcagcgctcgcatgggccgcccagatggga
acggtgaccttccacccctggccggtgcgcacggccaacctggacaacccggacgagctg
cggatcgacctggacccccagccggggcggaccttcgccgacgccgtcgtcgcggcccag
gccctccgcgaggtcatggccgaggccgggctcaccgccttcgcgaagacctccggcaac
cgtggcgtccacgtctacgcgcgcatccgccccacgcacgagttccaggatgtgcgccac
ggcgtcatcgggatcgcccgcgagctcgagcggcgcctgccggagctggtcaccacagcc
tggtggaaggaggagcgcggcgagcgggtcttcgtcgacttcaaccaggccaaccgcgac
cgcacgatcgccgccgcctactctccccggcccctgccgcacgcgcccgtctcgaccccg
ctgacctgggacgagctggccgacgccgacccgcgggatttcacggtccgcaccgtcccg
ggcctcctggctgagcgggagtgcccctgggcgggcatcgacggcacggcggccgacgtg
gccggcgcactggagctgtgggagcgggacctcgagcgcgggctcggcgagctgaacttc
ccgcccgactaccccaagatgcccggcgaaccgccgcgcgtcccgcccagcaggcgcaag
gccgaccgggcggacgcggagtacatggcccccaaggcggagcgcgacgccgagtggggc
accgccatcgcgcctccctacgggcccatgctcgccaagccggtcaagaagctccccgaa
ggcgagttcctgtacgagccgaagtgggacggcttccgcgccatcatctggcgctccggc
gaccgggtcgagatcggatcgcgcaacgccctgcccatgacccgctacttccccgagctc
gtcaccgccttcgtggagaaccttcccgaccattccgtcatcgacggcgagatcatcctg
gtcgacccggagtccggggaccgcctcgacttcgacacgctgcagcagcggatccatcct
gccgcctcgcgcatcgccaagctcagcgcagccacgccggccagcttcgtcgccttcgac
ctgctcgcgctgggccacgacaactacgtcgaacgccccttccgggaacggcgcgctgcg
ctcgaggaggccctgaaggacgccgagccgccggtgtacctcacgaacgccacccgggac
cccgccgtcgccctggaatggttcagcgccttcgagggtgcgggcctggacgggatcgtg
gccaagccgctcgacgagctctatgccgaggacaagcgggtcatgtccaagctgaagcac
gagcggaccgcggactgcgtcgtggccggctaccggctgtacaaggacgagcccgacgcc
atcggctccctgctcctgggcctgcacgacgatcagggcaagctccactcagtgggggtc
gtcggggccttcccgatggcccgccgccgcgagctgttcacggagctgcagcctctcgtc
acgaccttcgacggccacccctgggcctcggcgcagcctgccgaggaggcccccgacaac
cgcgaccagtccatcccgcgcactccgacggccgcggcccactcgcgctggaacgcgaag
aaggacctctccttcgtcccgctgcggcccgaacgcgtggccgaggtgcgctatgaccac
accgagggcgaccgcttccggcacaccgcacaatgggtgcggtggcgcgaggaccgctcg
cccgcgtcctgcacctacagccagctggaggagccggtccgctacgacctctcctccgtc
ctggacggggaccagtag
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