Streptomyces auratus: SU9_004015
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Entry
SU9_004015 CDS
T07630
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sauh
Streptomyces auratus
Pathway
sauh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sauh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SU9_004015 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sauh03400
]
SU9_004015 (ligD)
Enzymes [BR:
sauh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SU9_004015 (ligD)
DNA repair and recombination proteins [BR:
sauh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SU9_004015 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Peptidase_C41
Motif
Other DBs
NCBI-ProteinID:
QTZ90736
UniProt:
J1RGF4
LinkDB
All DBs
Position
complement(1013321..1014271)
Genome browser
AA seq
316 aa
AA seq
DB search
MNATDTDTGSATDTGTASVRAGRRTVRLHRPEKVLFPDDGLTKADVLDYYRRVAASMVPQ
LRGRPLMLERLPEGLGGPQFMQKDTPDHYPDWIRRAEVAKEGGTVTHTVCEDKATLLFLA
DQACLTFHRWLSRADRPLHPDRLVFDLDPPGPDFAAVRDAARRLCALLDELGLPAALMTT
GSKGLHVVVALDGKSDVDTVRSFAQDVTQVLAERHPDRLTTAVRKKSRGDRLYLDVQRNA
YAQTAVAPWSLRPKPGAPVATPLSRGQLDEPGLTPQHWSLRDVAGVLEQAAARPWSGVPA
RGRSLRTARRRLDALR
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccacggacacggacacgggctctgctacggacaccggcacggcctcggtgcgc
gcgggccgccgcacggtgcgcctccaccggccggagaaggtgctcttccccgacgacggg
ctgaccaaggccgatgtcctcgactactaccgccgggtggccgcgtcgatggtcccgcag
ctgcgcgggcgcccgctgatgctggagcggctccccgagggcctgggcggcccgcagttc
atgcagaaggacaccccggaccactaccccgactggatccggcgggccgaggtcgccaag
gagggcggcaccgtcacccataccgtctgcgaggacaaggcgaccctcctcttcctcgcc
gaccaggcctgcctcaccttccaccgctggctctcgcgcgccgaccgccccctgcacccg
gaccggctggtgttcgacctcgacccgcccggaccggacttcgcggccgtacgggacgcc
gcccggcggctgtgcgcgctgctcgacgaactcggcctgcccgccgccctgatgaccacg
ggatcgaagggcctgcacgtcgtcgtggcgctggacggcaagagcgacgtcgacacggtg
cggagcttcgcccaggacgtgacgcaggtcctggcggagcgtcacccggaccggctgacc
accgcggtccgcaagaagtcccgcggcgaccggctctacctcgatgtgcagcgcaacgcc
tacgcacagacggccgtcgccccctggtcgctgcggccgaagccgggcgctccggtcgcc
actcccctcagccgcggccagctcgacgagcccggactcaccccgcagcactggtcgttg
cgggacgtcgccggcgtcctggagcaggcggccgcccgcccgtggtccggggtgccggcc
cgtgggcggtcgctgcgtacggcgcgcaggcggctcgacgcgctgcgctga
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integrated database retrieval system
