Sorghum bicolor (sorghum): 110431408
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Entry
110431408 CDS
T01086
Name
(RefSeq) formin-like protein 5
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
sbi03015
mRNA surveillance pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110431408
09122 Translation
03013 Nucleocytoplasmic transport
110431408
03015 mRNA surveillance pathway
110431408
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
110431408
03041 Spliceosome [BR:
sbi03041
]
110431408
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110431408
Spliceosome [BR:
sbi03041
]
Complex C
Other components
EJC/TREX
110431408
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
SVIP
Motif
Other DBs
NCBI-GeneID:
110431408
NCBI-ProteinID:
XP_021306191
LinkDB
All DBs
Position
1:64446913..64451898
Genome browser
AA seq
732 aa
AA seq
DB search
MSSYPVLNNRPIDQWRVTDLKDELRKRKLPVKGLKDELVRRLFDSIQSEREAEETEEADE
DVGVNVDDQLPDANASEENTVTVTEVHQETVVHITQQVEAPTTEVGQESALSPTRGAPSV
DVEEASTAKGEVPESFAGTFEEVQVQTESTNEPLHEKTSDIDTNEAVIVNDAIDVNSDLT
PAEVKLGTMEASKIEEQDFPPAPVDAITSDASGPMDTDVVTAATSDAGPMDTDVVTAAPV
SDDGEKLAPKDDLGNKVSMYDEEHNNSDTMNEDRKPIESKPINQVPEVSPDLGSQIKCES
ISSDNLSTNKKNNIEDNLNANNFDLELEVQPKMVEPSSGITSLGGDLQPVDDDKELVKNQ
TSLEDLDSTANVDSYKKDSPEGGSPEKLNLDRSSGDESMEEDVAEIKQVESNMKSDVLEG
KNELNSEDVKEVILPDSVVEPSKEVIAEEKSAASAEKRKLEAEEGVANTEPIKRQRRWTA
DVAKVPERQTLSQTGPETPKDIFQPAFKRSFGRSDSTASIDSPKERIVPPSEKPATTSLR
IDRFVRPFTLKAVQELLGKTGTVQDFWMDHIKTHCYVTFSSVDEAVATRDAVYNLQWPPN
NGNKLVAEFVDPQEVKLKVDPPPPPAAPISPAAATRAPPVPQTQANQSVPRQAATPKEQL
PPPPPLAKPPIADPAALVRERLPPTPKKPEPPVVTLDDLFKKTQSSPRIYYLPLSEEEVA
AKLAAQGKGKKE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcatatcctgtgctaaacaaccgaccaatcgatcagtggagagtcactgatctg
aaggatgagctccgtaaaaggaagcttcctgttaaaggtttgaaagatgaactcgttagg
cgactctttgactccattcagagtgaaagagaagctgaggaaactgaagaagctgatgag
gatgtgggagtgaatgtggatgatcagttacctgatgccaatgctagtgaggaaaataca
gttactgttacagaagttcatcaggaaactgtggttcatatcactcagcaagttgaagct
cctacaaccgaagttggtcaggaatctgctctttctcccactagaggggcccccagtgtt
gatgttgaagaggcctcaacagccaaaggagaagtacctgaatcatttgctggaacattt
gaagaagtgcaagtgcagactgaaagtactaatgagcctcttcatgagaagacctcagac
attgacaccaatgaggcagtcattgtcaatgatgcaatcgatgtgaattcagacttgacc
cctgctgaagtcaagcttggtactatggaagcaagcaaaattgaagaacaggatttcccc
ccagcacctgtagatgccataacttcagatgcttctggtcctatggatactgatgttgtc
acagctgcaacttcagatgctggtcctatggatactgatgttgtcacagctgcaccagtt
agcgacgatggggagaaactggcacccaaggatgatttgggtaacaaggtgtcaatgtat
gatgaagagcacaataattctgataccatgaacgaggaccgcaagcccatcgaatcaaaa
ccaattaatcaggtacctgaggttagtccagatttagggtctcaaattaagtgtgagtcg
atttctagtgataatctgtcaactaacaaaaagaataatatagaagataatttaaatgct
aataattttgatttagaactagaggttcagccgaagatggtcgaaccatcatccggcatt
acttcattaggtggagatttgcagccagtggatgatgacaaagagctggttaagaaccag
acatctttggaggacttagattccacagctaatgtggactcatacaagaaagatagtcct
gaaggtggttctccagagaaattaaatctagacaggagttcaggtgatgagtcaatggag
gaggatgttgcggaaattaaacaagttgagtccaatatgaaatctgatgttctcgaagga
aagaatgaacttaactcagaagatgtgaaagaggtgatcctccctgattctgttgttgag
ccttccaaggaggttatagctgaagaaaagtcagcagcttcagcagaaaagaggaaactt
gaagctgaagaaggtgttgcaaacactgaaccaatcaagcggcaacgtcggtggactgca
gacgttgccaaagttccagagagacaaacattgagtcaaactggtcctgaaactcctaag
gatatttttcagcctgctttcaaacgatcttttgggaggtctgattcaacagccagtata
gattctcctaaggagcggattgtaccaccttctgagaaacctgccacaacttctttgaga
attgaccgatttgtacgtccatttaccctgaaagctgtgcaagagcttcttggtaaaact
ggaactgtacaagacttctggatggaccatatcaagactcattgctatgttacattttct
tcggtggatgaagctgtggctactagggatgctgtttacaacctacagtggcccccaaac
aatggcaataagttggttgctgaatttgttgatcctcaggaagtgaagctcaaggttgac
ccccctccaccaccagctgctcctattagcccagctgctgccacaagggcacctcctgtt
ccacagacacaggctaatcaaagtgtgccacgccaggctgctacaccaaaagagcaactg
ccacctccacctccccttgctaagccccctatcgctgacccagctgcattagtgagagag
aggcttccgcccactccaaagaagccagagcctcctgttgtgacacttgatgatctcttc
aagaagacacagtcctctccgaggatctattatctgcctttatcagaagaggaggtggct
gccaagcttgctgcacagggcaaaggaaaaaaggaatag
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