Sorghum bicolor (sorghum): 110435878
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Entry
110435878 CDS
T01086
Name
(RefSeq) uncharacterized protein LOC110435878
Organism
sbi
Sorghum bicolor (sorghum)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_1
RT_RNaseH_2
RT_RNaseH
Retrotrans_gag
Ty3_capsid
RVP_2
Motif
Other DBs
NCBI-GeneID:
110435878
NCBI-ProteinID:
XP_021317641
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All DBs
Position
5:complement(11886781..11890348)
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AA seq
1161 aa
AA seq
DB search
MDPNTKLLLDEIQKTKEELNRRFDDQDTKWERRFADWESGRSTRDATIDQRLAAIERVPP
ASIDPDVELRVAALESLRLDQIRAEQDVRVQALKSAVSGTETLVEDLKIQIAKLSSTTDP
GVFDTMSPRLGVAASPSSASAHVSAGLNVDVPKGHGSTSITRDSGHGSVTTLRHIPANGK
PPDPASSNSQFVFPLPPPLPTHPPPSSSWPSPFRPQMFPYHRPPPNPPPSHPYIPHPAFT
SPPPLISSQPSSPHSYTPNTGRLPKLHFTRFDGDNPRLWRSRAEKYFAMYAVPESMWISV
AKMHLDGLAALWFQSIESQIPHCSWLDFCRMMHDRFDCDQKELLIRQLFHIRQTSSVADY
VKQFSELIDQLSAYSSNTDPMYFTMCFIDGLRPEIKSVVLVMRPQTLDAASSIALLQEEA
TGTSGAAQARRGDWSAQLRLPAPPAVSRSALPLPPPPPRPSAPPLVTPAPSPPATGTPPA
DAKLSALKTYRRALGLCYKCGAKWSKDHRCSPEVLQAVDALWESFSSDDSLADSCPGSSS
PEQILLALSKSAISGVPAARTIRLTGKLQDIPITILIDSGSSSSFVNESIVHLLVNAPIQ
GVSCSDCWWRHPSHIDVVIGMDWLEAFSPMQVDWKHKWLAVPYEGSVRVLQGHDLVAPQY
MLLQLEQIAALPSPSTQCSSVPPAITSLLSKFEDLFQEPVSLSPSRACDHEIPLIPGAQP
VFLRQYRYSPKLKDEIERQVQDMLTHGIIQRSASAFSSPVLLVKKKDGTYRFYVDFRHLN
AITQKSKFPVPVFDQLMDELHGARWFSTLDLWAGFHQIVLKAGEEHKTTFQTHFGQYEFR
VMAFGLTSAPGTFQGAMNVTLAPGLRQFVIVFFDDILVYSQSFEEHVQHLRLVFQWLRAD
QWKLKLSKCSFAQESISYLRHVILAEGLATDPSKIQAVVDWPTPTSVKELRGFLGLAGYY
RKFVRNFGIVAKTLTGLLKKDQLFVWTPTHDKAFQLLKEALCSAPVLALPDFAKPFHINT
DASGAGIGAVLHQDGHPLAFLSKPLCPHNQGLTVYEKGYLALLMAVDQWRHYLLHAEFVL
HTDHQCLTHLNEQRLHTAWQQKVFARLQGLQYRIEYRKGTKNGAADALSRRSHPEHLSAI
SSVQHQWLASVTQSYASDPKA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggatccgaacaccaagctccttctggacgagatccagaagacgaaggaagagctcaac
cgccgattcgacgaccaggacacgaagtgggagcgccgcttcgcggattgggagtctggc
cgctccacccgcgacgccaccatcgaccaacgccttgccgccatcgagcgcgttccaccg
gcgtccatcgatcccgacgtcgagctccgcgtcgccgccctcgagtcgctccgcctcgac
cagatccgcgccgagcaagacgtgcgcgtccaggcgctcaagtctgcggtctcggggacc
gaaaccctggtggaggacctcaagatccaaatcgccaagctgtcttcgacgaccgaccct
ggggtgttcgacacaatgtctccccgcctcggcgtcgcggcttctccttcgtcggcgtcc
gcgcatgtgtctgccgggctcaacgtcgacgttcccaaggggcacggctctacatcgatt
acacgggatagtggccatgggtcagtcacgaccctgcgtcatatcccggccaatggtaag
cctccagaccctgcttcctccaactctcagtttgtgtttcctctgccaccaccgttgccc
actcatccacctccttcctcctcttggccgtcgccgttccgccctcaaatgtttccctac
catcgccctccaccaaaccccccaccatcgcacccttacatacctcatcctgcttttact
tcccctccgccgcttatttcatcccaacccagttcaccccattcctacactcctaacacc
ggtcgccttcccaagctccacttcactcgttttgatggtgacaatcctcgtttgtggcgt
tcccgtgctgagaagtacttcgccatgtacgctgtgcccgaatccatgtggatttccgtg
gctaaaatgcatctcgatggtcttgccgcactttggtttcaatccattgagtcgcagatt
ccacactgttcctggctggacttctgtcgtatgatgcatgatcgctttgattgcgaccag
aaggaactcctcattcgccaactcttccatattcgtcaaacatcctctgtcgctgattat
gtcaagcagttctcggaattgattgatcagctctctgcctattctagtaacacagacccc
atgtatttcaccatgtgtttcatcgatggcttgcgtcctgagatcaagtctgttgttctg
gttatgcgaccccaaactctcgatgctgctagctctattgcattgttgcaggaagaggcg
actgggacttctggtgccgctcaggccaggcgtggtgattggtctgctcaacttcgatta
ccggcaccgcccgcggtgtcacggtcggctctgcccctgcccccgcctccgccgcggccg
tcggccccaccgctcgtgacaccggcgccgtcgccaccggcgacgggtacaccacctgcg
gatgccaagctgtccgccctcaagacctatcggcgcgcactgggactgtgctacaagtgc
ggtgccaaatggagcaaggaccatcgatgctctccggaggtcctacaggccgttgacgcc
ttgtgggagtccttctcttctgatgattcattggcggactcttgcccaggctcttcatcc
cccgagcagatattgctggcgctgtccaagtctgcaatctcgggcgtgccggcagctcgc
accatcaggctgacaggcaagttacaagatatccctatcaccattcttattgattcgggc
agttcctcttcatttgtgaatgagtccatagtacacctgctggtcaatgcgccgatccaa
ggggtgtcatgttcagattgctggtggcggcatccttctcatattgatgtggttattgga
atggattggttggaggccttcagcccaatgcaagtggattggaagcataagtggttggca
gttccgtatgagggttctgtccgagtcctccagggacatgacctagttgctcctcagtac
atgctgcttcaactcgagcagatagctgctctgcccagtccttcaactcagtgttcctcc
gttcctccggccatcacatctctgttgtctaagtttgaggacttgtttcaggaaccagta
tctctgtcgccttctcgcgcctgtgatcatgagattccgttgattccaggcgctcaacct
gtgtttctcaggcagtaccgctattcgcccaagttaaaagatgagatcgagcgccaagtg
caggatatgttgactcatggtattattcagcgcagtgccagtgcgttttcctctccagtc
ctcctggtgaagaagaaggatggaacataccgtttctatgtggacttcaggcacctcaat
gccattacacaaaagtccaagtttcctgtgcccgtctttgatcaacttatggatgaactc
cacggtgctcgttggttttccacattggatttgtgggctggtttccaccagattgtgctt
aaggctggtgaagagcacaagacaacatttcagactcattttggccagtatgaatttcgt
gtcatggcgtttggactgactagtgcgcctggcacatttcagggcgccatgaatgtcacc
cttgctcccgggctgcgacagtttgtgatcgttttctttgatgatatcttggtgtacagc
cagtcgtttgaggaacatgttcagcatcttcggctggtattccagtggctacgtgccgat
cagtggaagctcaaattgtccaaatgcagttttgctcaagagtccatttcttacctgagg
catgttattttagcagaaggcttggccacagacccgtccaagattcaggccgttgttgat
tggccgaccccaacttcagttaaagaactacgagggtttctggggcttgcaggctattat
cgcaagtttgtccgcaactttggtattgttgccaagacactcactgggctcctcaagaag
gatcagttgttcgtctggactccgacccatgacaaggccttccagttgttgaaagaggcg
ctttgctcagccccggtgttagccctgcctgactttgctaaaccttttcatatcaacact
gatgcgtcgggcgcgggaattggcgcggtgttgcatcaggatggtcatccacttgcgttt
ctcagcaagccgctctgccctcacaatcaaggactcacagtctatgagaaggggtatctg
gctctgcttatggctgtggatcagtggcgtcactacctacttcatgctgagtttgtgctc
cacaccgatcatcagtgcctgactcacttgaatgagcaacgcctccacacagcctggcaa
caaaaggtctttgctcgtttacaagggctacaatacaggatagaatatcgcaaaggcact
aagaatggtgccgctgatgctctgtcacgccgctctcatccggagcacttgagtgctatc
tcctctgtccaacaccagtggctcgcatcagtcacccagtcgtatgcttctgatcctaag
gcttag
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