Sorghum bicolor (sorghum): 8056154
Help
Entry
8056154 CDS
T01086
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8056154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8056154
03009 Ribosome biogenesis [BR:
sbi03009
]
8056154
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8056154
Spliceosome [BR:
sbi03041
]
Complex A
U1 snRNP components
U1 related factors
8056154
Complex B
8056154
Ribosome biogenesis [BR:
sbi03009
]
Eukaryotic type
Pre-60S particles
Helicases
8056154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
8056154
NCBI-ProteinID:
XP_002458964
UniProt:
A0A921UT18
C5XFL3
LinkDB
All DBs
Position
3:complement(70727349..70731596)
Genome browser
AA seq
578 aa
AA seq
DB search
MNPYDLRFADPSSYHDRRSDLAVAPTFAPPAPVAAVNPNPYAAAYPPVPVPVPAAPAGGD
YQRYGQGGRGRGGGGRGGGGGYGGGGGGYGGGGRGGGRGRDGLDSLALPKPDFRSLIPFE
KNFYVECPSVQAMSEADVAQYRRLRDITVEGRDVPKPVRYFQEANFPDYCMQAIAKSGFV
EPTPIQSQGWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAP
TRELAVQIQEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLEAG
HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVEALARQFLQ
NPYKVTIGSPELKANHSIQQIVEVISDHEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKI
TRQLRMDGWPALSIHGDKAQAERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINYD
FPTTLEDYIHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILREAGQAVNPALESMSKS
SNSGGGGNFRSRGRGGFGNRGHMSGSNTFPLGGGRRPY
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgaacccctacgacctccgcttcgccgacccctcatcctaccacgacaggcgcagcgac
ctggccgtggctcctacgttcgctccgccggctcccgtggctgcggtgaacccgaaccct
tacgccgccgcctacccgcccgtgccagtgcccgtgcccgcggcccccgcgggcggcgac
taccagcgctacgggcagggcggcagaggccgtggtggaggcggcagaggaggcggcggt
gggtatggaggtggcggtggtgggtatggaggtggcggcaggggaggtggtcgcgggagg
gacgggcttgactcgcttgccctccctaagccggacttccggagcctgataccgttcgag
aagaacttctacgtggagtgtccctccgtccaggctatgtcggaggcggatgtggcgcag
taccgccgcctccgggatatcaccgtagagggccgggatgtgcccaagccggtccgatac
ttccaggaagccaacttcccagattactgcatgcaagcgattgccaaatctggatttgtg
gagccaactcctattcaatctcaaggttggcctatggctttgaagggtagggacctgatt
ggtatcgctcaaacaggctcagggaaaacattatcttatctgctacctgggttggttcat
gttggtgcccagcctcggctagaacaaggcgatggcccaattgtattaatcctcgccccc
acaagagaactggctgttcaaatacaggaagaatctacaaaatttggatcatattcaaga
actagaagcacatgtgtctatggtggtgcacctaagggtccacaaatacgtgaccttaga
agaggagttgaaattgtcattgcaactcctggtcggttgattgatatgctggaagccggc
cacacgaacctacgtagagtgacataccttgtgctggatgaggcagaccggatgctagat
atgggttttgagccccaaattcgaaaaatagttgcacagatccgcccagacaggcaaaca
ttgtactggagtgccacatggcctagagaagttgaagccttagcaaggcagtttctgcaa
aatccttataaggtaaccataggatcacctgaacttaaagctaatcattccatacaacaa
attgtagaagttatttcagaccatgagaagtatccaagactcagtaagctcttgtctgat
ctaatggacggaagccgtatcttgatattcttccaaacaaaaaaggactgcgataagatc
acacggcaacttagaatggatgggtggccggcattatctatacatggtgataaagctcaa
gctgaacgggactatgttcttgcagagtttaagagcggcaagagtcccataatggctgct
acagatgtggcagcacgtggtcttgacgtgaaggacataaagtgtgtgataaattatgat
tttccaacaactcttgaagattatattcacaggataggtcgaactggccgtgctggtgct
agcggaactgcatttacttttttcacacatgcaaatgctaagttctcaaggaatctagtg
aagattctgcgggaagctggacaagctgtgaatcctgcactagaatccatgtccaagtct
tcaaactcagggggaggaggcaatttccggtcgagaggcagaggtgggtttggtaaccgg
ggtcatatgtctggatcaaatacctttcctttaggaggagggagaaggccatattga
DBGET
integrated database retrieval system
