Sorghum bicolor (sorghum): 8064471
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Entry
8064471 CDS
T01086
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
8064471
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8064471
04121 Ubiquitin system [BR:
sbi04121
]
8064471
03036 Chromosome and associated proteins [BR:
sbi03036
]
8064471
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8064471
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
8064471
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
8064471
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
8064471
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
8064471
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-HC5HC2H_2
RTT107_BRCT_5
zf-C3HC4_2
zf-C3HC4_4
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
zf-RING_5
LIG3_BRCT
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
8064471
NCBI-ProteinID:
XP_002448162
UniProt:
C5YC03
LinkDB
All DBs
Position
6:complement(50648100..50652115)
Genome browser
AA seq
623 aa
AA seq
DB search
MENLRRLLNPLVLNLQKMELELTCPVCLKLLTSPTTLPCYHTSCSKCALTPTSKGYSCAI
CKSGYCSQDLRPASHLESIVSIHRSLSSTVCTMIEQQDAQVNIPVAKTASHGTPESGNRS
GVMEKYDQMKSYNPVASKLVYDQSTGPAFGNMEGVQAKDPAVENNAGAAAVAPTAIVQKG
HSGSQSSDGPGDLDCDSNDLEGELITSRSLLQTALKRETNVMDDHTRELKRQKSNDQVQR
QTTMASAWKCEFCHSSQVTECTGPLSHYLNGEPIEADQAWKSSVHHVHEKCVEWAPQAFF
TGDIANNLEPELARASKIKCSVCGLKGAALGCLVKSCRNSFHVPCAYNIKGCKWDQENFV
MLCSTHSSKKLPCERSKSKKKAKLQQPSSDTDGLNSPSPMQRDELWTASPFLTSGWVICG
SALIGHEKEILDQFECHTGITVTNTWSSDVTHVIANTDERGACARTLKVLMAILAGKWVL
NVNWLKDCIEARKPIPEEPYEISCDVHGSVNGPRSGRLRAMQQAPNLFAGLTFYFSGHFM
PGYKANLEDLIAAGGGSILEKTQLSCASLILYSMEPPQGNSPNTLETINKRIAEAQELAA
TVGCKAIPHTWLLDSIASCNLSV
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggagaacctgaggaggctcctgaatccgctggtgctcaacctgcagaagatggagctg
gagctcacctgccccgtctgcctgaagttgctcacctcgccgacaacgctgccgtgctac
cacacatcctgcagcaagtgtgcccttacaccgacttcaaaaggttacagctgcgccatt
tgcaaatctggctattgttctcaagatttaaggccagcttctcatctcgagtcgatagtg
agcattcacaggagcctcagctctaccgtatgcaccatgattgaacagcaggatgctcaa
gttaacattcctgttgcaaagacagcatctcatggaacaccagagtcaggaaacagaagt
ggggtgatggagaaatatgaccagatgaaatcttacaaccctgttgcttcaaagctagta
tatgatcagtcaactggacctgcatttgggaacatggagggtgttcaagcaaaagatcct
gcagtagagaacaatgctggtgctgcagctgttgcaccaacggctatagtacaaaagggt
cattctgggtcacaatcttctgacggccctggggatttggattgtgacagcaatgacctt
gaaggagaactgataacaagcagatcacttcttcaaactgcattgaaaagagagacaaat
gtaatggatgaccataccagagaattgaagaggcaaaaatcaaatgaccaggttcaaaga
caaacaaccatggccagtgcttggaaatgtgagttctgtcattcttcccaagtcactgag
tgtactggacctttgtcacattatctgaatggggagccaatagaagctgatcaagcttgg
aaatcaagtgttcatcatgtccatgagaaatgtgttgaatgggctcctcaagcattcttt
actggtgacattgcaaataacttggagcctgagttggcccgtgcttctaagatcaaatgc
agtgtttgtggcttgaaaggtgcagcacttggctgccttgtgaagagctgccgcaatagt
tttcatgtcccatgtgcctacaacatcaaaggctgcaaatgggatcaagagaacttcgtt
atgctgtgttctacacattcttcaaaaaagttgccttgtgaaagatcaaagtcaaaaaag
aaggccaagttacagcaaccatcttctgacactgatggtctgaattcaccctctccaatg
caaagggatgaactttggactgcctcaccttttctgactagtggatgggtgatatgtgga
tctgccctcattggccatgagaaggaaatcttggatcaatttgagtgtcacactggcatc
actgtaactaacacttggagttcggatgtgactcatgtgattgctaatacggatgaacgt
ggggcatgtgctaggacactcaaggttctcatggcaattttagctgggaagtgggttctc
aatgtgaactggctgaaagactgtattgaggctaggaaaccaatcccagaagagccctat
gagataagctgtgatgttcatggctctgttaatgggcctcgctcaggaaggcttcgagca
atgcagcaggcaccaaacctgtttgctgggttgaccttctatttcagtggccatttcatg
ccgggatacaaggccaaccttgaagatttgattgccgcaggagggggttccattttggag
aagactcagctctcttgtgcatccttgattctttacagcatggagccaccacaaggaaac
agtcccaacacccttgagaccatcaataagagaatagctgaggctcaagaactggcagcc
acggttggctgcaaagccattcctcatacatggcttctggattctattgcatcctgcaat
ttgagcgtgtga
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