Sorghum bicolor (sorghum): 8066673
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Entry
8066673 CDS
T01086
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8066673
03041 Spliceosome [BR:
sbi03041
]
8066673
03036 Chromosome and associated proteins [BR:
sbi03036
]
8066673
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
8066673
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
8066673
mRNA cycle factors
Common to processing body (P body) and stress granule
8066673
Spliceosome [BR:
sbi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
8066673
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
8066673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
8066673
NCBI-ProteinID:
XP_021317069
LinkDB
All DBs
Position
5:65515624..65520289
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AA seq
625 aa
AA seq
DB search
MASSRTSWADVADAEPAPPPPVTAPAPAAASNGPAPRSSYVPPHLRNRPASSTPAASAPP
PRSTAGLLSRPGAGSSFGASATGGSFGAGRSRGGRSWDREPDPFADSDPAPAPSSATDGT
PFEEHQNTGINFDAYEDIPVETSGREVPAPVSTFAEIDLGEALNDNIRRCKYVRPTPVQR
HAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMKGPPSAGGGRQRGGGMGMRTAYPSA
LILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPITQQLRELERGVDILVATPGRLVD
LLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPLPGVRQTMLFSATFPKEI
QKMASDFLDNYIFLAVGRVGSSTDLIAQRVEFVQEADKRSHLMDLLHAQRDTGKPTLTLV
FVETKRGADSLESWLCMNGFPATSIHGDRNQQEREYALRSFKSGQTPILVATDVAARGLD
IPLVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDNNSSLARSLADLMQESNQE
VPAWLLRYAARPSYGGGGGGRNRRSGGGSRFGGRDFRNDSSSFGKGGSRGGGDYYGGGSS
GGYGGGSSYGGGGYGGGAGAPSSWD
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcctcccgcacctcctgggccgacgtcgccgacgccgagcccgccccacctcca
cccgtcaccgcccccgcccccgccgccgcatccaacggccccgccccgcggtcctcctac
gtcccgccccacctccgcaaccgcccggcctcctccacccccgccgcctccgccccgcct
ccccgctccacggccggcctcctctcccgccccggcgccggcagcagcttcggcgcctcc
gccaccggcggcagcttcggtgccggccgttcccgcggcgggcggtcgtgggaccgggag
ccggacccgttcgcggactccgacccggccccggccccctcctccgccaccgacggcacc
ccgttcgaggagcaccagaacacggggatcaacttcgacgcgtacgaggacatccccgtc
gagacctccggccgcgaggtccctgcccccgtctcgacgttcgccgagatcgacctcggc
gaggcgctcaacgacaacatccggcggtgcaagtacgtgcgccccacgcccgtgcagcgc
cacgccatcccgatctcgctggccgggcgggacctcatggcctgcgcgcagaccgggtcc
gggaagacggccgcgttctgcttccccatcattagtggcatcatgaagggaccgccgtct
gctggaggtgggaggcaaaggggtggcgggatggggatgaggaccgcttatccgtccgcg
ctcatactctcgcctactagagagctctccatgcagattcatgaagaggcgaggaagttt
tcgtatcagactggtgttagggtagttgttgcttatggaggagcgccaattactcagcag
ctaagagaacttgagaggggtgttgacattcttgtggctacccctggccgattggttgat
ttgttggaaagggcaagagtatctttgcagtcaattagataccttgctcttgatgaggca
gatagaatgcttgatatgggttttgaaccacaagttagaagaattgttgagcaaatggac
atgccacttccaggtgtaaggcagacaatgctgtttagtgcgacgttcccaaaagagatc
cagaaaatggcatcagatttcctggataactacatcttcctggctgttggaagagttggg
tcaagtaccgatttgattgcccagagagttgagtttgtgcaggaggcagataagagaagc
cacctgatggatcttcttcatgcacaaagagatacaggaaagccaactctcacgcttgtc
tttgtggaaaccaagaggggtgctgattcattggaaagctggttgtgcatgaatgggttt
ccagctacttctattcatggagatagaaaccagcaggaaagagaatatgctttgagatcc
ttcaagagtgggcaaactcctattttagttgcaaccgatgtggcagctcggggcctcgac
attcctcttgttgctcatgttgtgaacttcgatctccctaatgatattgatgactacgta
cacaggattggaagaactggaagagccgggaagagtgggcttgcaactgccttcttcaat
gataataactcatcactggcaagatctcttgctgacctaatgcaagaatctaaccaagaa
gtacctgcatggctcttacgctatgcagctcgtccttcttatggtggtggtggtggtggg
aggaaccggcgatcaggtggagggagccgctttggtggccgtgacttccgcaatgattct
tcctcatttggcaaggggggatctcgaggtggtggtgactactatggtggaggcagcagt
ggtggttacggtggtggctcctcatatggaggtggtggatacggtggtggagctggggct
ccgagttcctgggattaa
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