Sorghum bicolor (sorghum): 8067028
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Entry
8067028 CDS
T01086
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
sbi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8067028
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
8067028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8067028
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
8067028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
8067028
NCBI-ProteinID:
XP_002444828
UniProt:
C5YJM6
A0A921UAR5
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Position
7:65057536..65061324
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AA seq
592 aa
AA seq
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MDPDGDPAFHRNEAISAVQDVDQYYGEDDDFDELYNDVNVGDGFLRNSHPPPQHAPPPQQ
NNHQQQQQQQQQLPPPPAQLNHHHQPQQQQLPPPPLPQPQQLPPHPLPPHAPPQQQGYAP
AVAAPSPSQPPPQPNLPPPPGPAPAPPQHHQIQQRDGFHRPGGNYSGGPVVVANGAGVGG
GDGPGGTTLFVGDLHWWTTDADLEAELSKYGPVKEVRFFDEKASGKSKGYCQVDFYDPAA
AAACKEGMNGYSFHGRPCVVAFASPNTVRRMGEAQVKTQQALAAQTSSVQPKGGSRGGGG
GAMPHAGGNYSGGRGGGAVSGGGGGGNWGRGGGGGRGPVGNMRNNRMGPAVGRGIGNGMV
APPPPMLPQGGMLGQGFDPGFGAMGRMGGGFGNFPVGPGAGPFPGMMQPFPPVVAPHVNP
AFFGRGGMGAGGVGMWPDPSMGAWGAEEQSNYGDDAASDHQYGEGGSHGKERPPEREWSG
ASERRRDREKDMPPEQEWSERRHRNEHDMGRERDRDYGRDRERDRDRERDRDRERDRDRE
RHRDDRDRYGDYHKHRDRDSERNENWDRGRSSGLRSRSREADHSKRRRMTPQ
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggaccccgatggcgacccggcgttccaccggaacgaggccatctccgccgtgcaggac
gtcgaccagtactacggcgaggacgacgatttcgacgagctctacaacgacgtcaacgtc
ggcgacggcttcctccgcaactcccacccgccgccccagcacgccccgcccccgcagcag
aataaccaccaacagcagcagcagcagcagcagcagctccctcctccgcccgcgcagctg
aaccaccaccatcagccacaacagcagcagctccctcctccgcctctgccgcagccgcag
cagctcccgccccaccctctcccgccgcacgccccgccccagcagcaggggtacgcgcct
gctgtggcagcgccgagtccgagtcaaccgccgccccagccaaatctcccgccgccgccc
gggcccgcccccgcgccgcctcagcaccatcagatccagcagcgcgacgggttccaccgg
ccaggagggaactacagcggcggtcccgtcgttgtcgccaacggagctggcgtcggcggg
ggcgatggccccggtggcacgacgctgttcgtgggcgacctccactggtggaccaccgac
gctgatctagaggcggagctcagcaagtatgggccggtgaaagaggtcagattcttcgac
gagaaggccagcggcaagtccaaggggtactgccaggtcgacttctacgaccctgccgct
gccgctgcctgcaaggagggcatgaacggctactcgttccatggccgtccgtgtgttgtg
gcgttcgcgtcccccaacactgtgcgccgcatgggcgaggcgcaggtgaagacccagcag
gccttggctgcacagacatcatcagtgcaaccaaagggtggtagtagaggtggtggtggt
ggtgctatgcctcatgctggtggtaattacagtggtgggcgtggaggaggtgctgtgtcc
ggaggcggtggtggtgggaactggggtagaggtggtggtggaggtagaggccctgttggt
aatatgaggaacaacagaatgggtcctgcagttggccgtggaattgggaacggcatggtt
gcgccaccacccccgatgctgcctcaggggggcatgctggggcaggggtttgatcctggt
tttggcgcaatgggaaggatgggtggtgggtttggtaacttccctgttggaccaggtgct
gggccgtttcctgggatgatgcagccatttcctcctgttgttgcaccacatgtaaacccg
gccttctttggtcgcggtgggatgggggctggtggggtggggatgtggcctgatcctagc
atgggggcttggggtgcagaagaacagtcaaattatggggacgatgcagcatctgatcat
cagtatggggaagggggaagccatgggaaggagaggccaccagagagggagtggtctggt
gcatcagagaggagacgggacagagagaaagatatgcctcctgaacaggagtggtcagag
aggaggcaccggaatgagcatgacatgggccgagagagggatcgtgactatggcagagac
agagaaagagaccgtgacagagagagagaccgtgacagagagagggaccgagacagggag
aggcatagggatgatagagatcgttatggtgattatcacaagcacagagatcgtgattca
gagcgtaatgaaaactgggacagggggaggtcatctgggttacggagcaggtcgagggag
gctgaccattctaaacgtaggcggatgacacctcaatag
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