Sorghum bicolor (sorghum): 8068420
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Entry
8068420 CDS
T01086
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8068420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8068420
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8068420
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8068420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
8068420
NCBI-ProteinID:
XP_002436439
LinkDB
All DBs
Position
10:2341703..2343083
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AA seq
404 aa
AA seq
DB search
MSSKSINCIHWDSECSSEYGDLVSEFESNWTAVWSASTIRGRHARILRRHHKTRARPRLT
PHVPRFKTQTRQDAVTLTGGFEATAMYSHDGGPVLIHPLQPPPPPPPPLCSFVHIVPQYT
MVEYPPQPAPLVFTPGGGGGAFLEAATKDVRPEVRDVWAGNFNDELSNLTAVLPHYPWVC
VDTEFPGAVHDSDTPRYLRGPRESYALVKKNVDDLKLLQVGIALSGPAGRFPVAWQFNLR
GFDPARHPYAPASLALLRAQGMHFATMNEFGIDPDAFAVGFHRSGLACGQLTWTAFSGSY
DFAYLAKVLTGGQPLPATLDGFLALVRQLFGPNVLDVKHLARCCAMRGGLEQVAAALGVE
RAAGHAHCAGSDSLLTTDVLLAMLNSFFMNVDVLVHAGTIVDLA
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtaaatcaatcaattgtatacattgggattccgaatgttcatcggagtatggc
gatctggtttcagaattcgagtcgaattggactgcggtctggtccgcttcgacaatccga
ggtcggcacgcccgtatcttgcgccgccaccataaaaccagggcacggccacgattaacg
ccccacgttccaagattcaaaacgcaaactcgccaagacgcggttacccttaccggcggt
tttgaagccacggcgatgtactcccacgacggcggtccggtcctcatccaccctctgcag
ccgccgccgccgccaccgccaccgctgtgtagcttcgtccacatcgttccacagtacacc
atggtggagtacccgccgcagccggcgcccctggtgttcacgcccggcggcggcggcggc
gcgttcttggaggccgccaccaaggatgtgcgccccgaggtgcgcgacgtgtgggccggc
aacttcaacgatgagctctccaacctcacggcggtgctgccgcactacccctgggtgtgc
gtcgacaccgagttccccggcgcggtccacgactcggacacgccgcggtacctccgcggg
ccgcgggagagctacgcgctggtgaagaagaacgtggacgacctcaagctgctccaggtc
gggatcgcgctgtcgggccccgccggacgcttccccgtcgcgtggcagttcaacctccgg
ggcttcgaccccgcgcgccacccgtatgcgccggcgtccctcgccttgctccgcgcgcag
gggatgcacttcgccaccatgaacgagttcggcatcgacccggacgccttcgccgtcggg
ttccaccgcagcggcctcgcctgcgggcagctcacctggaccgcgttctcgggctcctac
gacttcgcgtatctcgccaaggtgctcaccggcggccagccgctgccggccacgctggac
gggttcctcgccctggtccgtcagctgttcggccccaatgtgctcgacgtgaagcacctc
gccaggtgctgcgccatgcgcggggggctggagcaggtggccgccgcgctcggcgtggag
cgcgccgccggccacgcgcactgcgccggctctgacagcctgctaaccaccgacgtactc
ctggcaatgctgaatagcttcttcatgaacgtcgatgtgctcgtgcacgcaggaaccatc
gtagacctagcctag
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