Sorghum bicolor (sorghum): 8070438
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Entry
8070438 CDS
T01086
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8070438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8070438
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8070438
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8070438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
AAA_19
nSTAND3
ATPase
AAA_16
PhoH
Motif
Other DBs
NCBI-GeneID:
8070438
NCBI-ProteinID:
XP_021313012
LinkDB
All DBs
Position
3:complement(8460029..8473518)
Genome browser
AA seq
1241 aa
AA seq
DB search
MLLTSVLRGRVRLLRRPRPLTMPSPLFLSRNPNPSPGTTNPHLSSTPVSAAMSTTGVYVP
PMRRLRSVIASTNGSLAPPPSAAAQAQQTARTPEWLVDGRSLSPPSPPQPRRRDLPPLPR
PPQPEHFRQQSAGYARYAYDDFSEDDSDKDMDRTSVSSKGASTLDNVDEWKWKLHMLLRN
DDEQEIISRERKDRRDFEQLAQLAERMRLHSRQYSKVVVFSKVPLPNYRSDLDDKRPQRE
VSIPAGLQREVDALLADYVARKRTNNGNFPSSAFSRSSSTDSFATDEGFFDQQDNQTSTS
AVMDRIQRRKSLQLRNQQAAWQESNDGQSMMEFRRSLPAFKEKQTLLEAISQNQVIVVSG
ETGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAIAVSERVAAERGEKIGESVGY
KVRLEGMRGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLIVLKDL
LPRRPELRLILMSATLNAELFSSYFGGAPMIHIPGFTYPVRSRFLEDILEITGHRLTPYN
QIDDYGQEKSWKMQKQSLRKRKSQIASVVEDAVDAADLRDYSSRTRDSLSCWNPDSIGFN
LIENVLCHICQKERSGAILVFMTGWDDINALKEQLQANPLLGDPSKVLLLTCHSSMASSE
QKLIFDKPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWIS
KASARQRRGRAGRVQPGECYHLYPRSVYDAFADYQLPELLRTPLQSLCLQIKSLRLGSIS
EFLSRALQSPESLSVQNAIEYLKVIGAFDQNEELTVLGKHLSMLPVEPKLGKMLIFGAIF
NCLDPILTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAYEGWREAERD
RAGYDYCWKNFLSVQTLKAIDSLRRQFLFLLKDTGLVDENMTVCNKWSRDENLVRAVICA
GLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKEAKIPFPWLVFNEKVKVNSVFLRD
STAISDSILLLFGGCIKQGGLDGHLKMLGGYLEFFMNRDLASTYLSLKSELENLIHCKLQ
NPRMNIQTSEELLSAIRLLVTEDPCSGRFVYGRQEPRSKKAKTMFSPSSMSGGGGNGGDN
AKNQLQTFLTRAGHSNPTYKTKQIKSYLFRSTVEFNGMQFVGQPCANKKLAEKDAASEAL
NWLTGDGGATITDSRGAQDADPMPLLMQPPRRRRHSHRRRS
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgctcctgacctccgtcctccggggtcgcgtccgcctcctccgccggccccgcccgctg
accatgccctcccctctcttcctctccagaaaccctaatcctagccccggcaccactaac
ccccacctctcgtcgacccccgtgtcggccgcaatgagcaccaccggagtgtacgtgccg
ccgatgcggcggctccgctccgttatcgcgtcaaccaacgggagcctcgcgccaccaccg
tccgccgcggcgcaggcacagcagacggcgcggacgccggagtggctggtggacggtcgt
tcgctcagccccccctcgccgcctcagccgcggcggcgcgatttacctccgttgccgagg
ccaccccagccagagcatttccggcagcagagcgctgggtatgcccgctatgcctacgat
gatttctctgaggatgactcagataaggacatggaccgcacgtcagtttcgagcaagggt
gcatccactttagataatgttgatgagtggaaatggaaactgcacatgctacttcgtaat
gatgatgagcaagagattatctcaagggaaagaaaggataggcgagattttgaacaactt
gcccaactggctgagagaatgcgtttgcacagccgtcagtattcaaaagttgttgtgttc
agtaaggttccattgcctaattatagatcagatcttgatgacaaaagaccccaaagagag
gtatctatacctgctggtttgcaaagagaagttgatgctctgctcgcagattatgttgca
cggaagagaacaaacaacgggaacttccctagttcagccttctcacggtcaagcagcaca
gacagttttgcaactgatgaaggcttctttgatcagcaagataatcaaacttccactagt
gctgtgatggacagaatccagcgaaggaaaagcctgcagttgcggaatcagcaggctgct
tggcaggaatcaaatgatggccaaagcatgatggagtttcgtcgcagtcttcctgctttt
aaagagaagcaaactttattggaagctatatcacagaatcaggtcattgtagtttcaggt
gagactggctgcggtaagacaacacaactaccgcagtacattctagaatctgaaatcgat
gctgctcgtggtgctacgtgcagtattatttgcactcaaccgaggcgaatatcagcaatt
gctgtgtccgaaagagttgctgctgaaagaggcgagaaaattggtgaatcggttggctac
aaagttcgactggaaggcatgagaggaagggatacacgccttcttttctgcaccactgga
gtcctgttgcgcagattgttggtggacagaaatttgaaaggtgttacccatgttattgtt
gatgaaatccatgagagaggcatgaatgaagattttcttcttattgtcttaaaggatctt
cttccacgtcgtcctgagctgagacttatattgatgagtgcaacccttaatgctgagcta
ttctcttcatactttggtggagcacccatgatacatatacctggttttacatatcctgtt
cggagtcgttttctggaagatattcttgaaattactgggcatcgtttaactccttacaat
caaattgatgactatggccaagaaaaaagttggaagatgcaaaagcaatctctacgaaag
cggaagagccaaatcgcttctgttgtggaagatgcagttgatgccgctgatttgagagac
tatagttcgcgaactcgtgattctctatcctgttggaatcctgattcaattggttttaat
ttaatagaaaatgtcttatgccatatttgtcaaaaggaacgatcaggtgcaatacttgta
tttatgactgggtgggatgacattaatgcattaaaagagcagctgcaagcaaatccactg
cttggagatccaagcaaagttttgttgctcacttgtcatagctctatggccagttcagag
cagaaattaatatttgataagcctgagcctggagtaaggaaaatagttctcgccacgaat
ttggctgaaactagtattactatcaacgatgtagtttttgttgttgactgtggcaaggca
aaagagacatcttacgatgcactgaataatactccctgtttgcttccaacctggatctcc
aaggcttctgccagacaaagacgaggacgagctggtcgagtccaaccaggggagtgctac
catctttatccacgatctgtatatgatgcatttgctgactaccagttaccagaacttctg
agaacccctcttcaatccctctgtttgcaaataaaaagcttgaggctaggaagtatatca
gaatttttatccagagctttacaatcacctgaatctctatcagtacaaaatgctattgaa
tatctcaaagtcattggagcttttgatcagaatgaagagttgacggttcttggaaagcac
ttgtctatgcttccagttgaacctaagttaggaaagatgcttatttttggggctattttt
aattgtctggaccccatattaaccatagtttctggacttagtgttagagatccttttttg
actcccttcgataagaaagatcttgcagagtcagctaagttgcagttttcatgccgggac
tacagtgatcatcttgcacttgttcgtgcatacgaaggatggagggaggctgaaagagac
cgtgctggttatgactactgctggaaaaattttctctcggtgcaaacattgaaagcaata
gattctcttcggcggcagtttctctttcttctgaaggatactggtttggttgatgaaaac
atgactgtgtgcaataaatggagccgtgatgaaaatctagttcgggcagtaatttgtgca
ggactatatccaggtgtttcctctgttgtgaacaaggagaaatccatctccctcaagaca
atggaggatggacaggttatgctttattcgagttcggttaatggtaaagaagccaagatt
ccattcccctggctagttttcaatgagaaggtgaaggtgaattctgttttcctccgggat
tcaactgctatatctgattctatactgttgttatttggaggctgcataaaacaagggggc
ttggatggacacttaaaaatgcttggaggttatcttgagttcttcatgaatcgtgatctt
gcttcaacttatttgagtctgaagagtgaacttgagaatttaatccattgcaagctccaa
aacccaaggatgaatatccaaacgagtgaagagctgctatcagccatccgtttgctggtg
actgaggacccatgcagtgggcggttcgtctatggccgacaggagccaagatcaaagaaa
gcaaagacgatgttttcgccatcctccatgagtggcggtggtggcaacggaggggataat
gccaagaaccagctccagactttcctgacccgggccgggcacagcaaccccacctacaag
acgaagcagatcaagagctatctcttcaggtcgacggttgagttcaacggcatgcagttc
gtggggcagccttgtgcaaacaagaaacttgcggagaaggatgctgcgagtgaggcactg
aactggctcacaggagatggtggtgcaacgatcactgactctaggggcgcccaggacgca
gaccccatgcccttgctgatgcaaccaccacgcaggcgacggcatagccatcgtcggagg
agctga
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integrated database retrieval system
