Sorghum bicolor (sorghum): 8071118
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Entry
8071118 CDS
T01086
Name
(RefSeq) uncharacterized protein LOC8071118
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8071118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8071118
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8071118
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8071118
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
8071118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
zf-C2H2_2
DUF6415
Motif
Other DBs
NCBI-GeneID:
8071118
NCBI-ProteinID:
XP_002445169
UniProt:
C5YI06
LinkDB
All DBs
Position
7:complement(6937927..6947150)
Genome browser
AA seq
955 aa
AA seq
DB search
MAGAAASPVGGHVVERFRSRLREEAGGGEPGAAAVVRVYAEALRELTFNCKPVITELTII
AGQHAALAARGIADAVCARVAEVPPDQILPSLYLLDSIVKNIGGEYVEHFATRLQSVFVD
AYYRVHPNQYTSMRRLFRTWWPVFPSSVLHGIEDDLQFSPSETNRPTTSTNQTESLSPRL
SHGIHVNPKYLEAQHKFKQANVAHQSAARDTTQMTDVQEDLINGLPSNSSRGRPSMFQKS
SLQYADNPDQQETFRPLAGTIRVTSPHLLSTHSSDVNLDGPLVNSRRNMSRSPPLDVFPR
NVSPKRALERLPPSHSVLGPDPRKLPDRNGRLRLVFDDGVQRSTISMLDEEYRKQSAREL
IDAYGNCQGRDADERLPKVQRLDPNGMASRSSARNWLTSEEEEYSWEDMSPTLTDRVRSS
MPSFPPGTMRAGFPGANAGLLESDVGRHNFPSQITRSSVDGPPYNLEDRITTASHVDIST
RRYPSNFGVQNGALLEYQNSEDTLNHGRIDTMPAPPWQKPTGLPLRIQAPQHPSVLDRIP
QPANGEMAVKRLDISGTYNGLNVDNIPLVEKHRSSPSAPIEWLPLHHTRSQTLPLIPPDT
KHVRSAPNSLEISSFVSQGASSSVFVPRHQYDALDRKTVTGNLAQPPYQHQDLLPSSQQN
QGTILGNQAHPHRPTQLHPHPHSHSHHQETFRSFASGMSVSPFQGQGGNATMTPVSVLPT
SFSVPPAVPPYGVPPLPPGPPPVPLQMGSSSSQVGGPQPFVSGLLSNLMRHGVISLEPPS
QSQDSVGVDFNVDLKLRNESVINALYQDLSRQCKTCGLRFKCQEEHRAHMDWHVTKNRNS
KNRKQSSRKYFVTVGEWLRAAETVGNDGVPAFVPSDPVPDRKEEKEIAVPADEEQTACAL
CQEPFEDFYSDETDEWMYRGAVYMNAPDGNIDGLERSQLGPIVHAKCRSGPSNTS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggccgcggcatcccccgtggggggccacgtggtggagcgcttccgctcgcgg
ctgcgcgaggaagcgggcggcggcgagccgggcgccgccgcggtcgtgcgcgtgtacgcg
gaggcgctccgcgagcttaccttcaactgcaagccggtcatcaccgagctcaccatcatc
gcgggccagcacgccgcgctcgccgccaggggaatcgccgacgccgtctgcgcccgcgtc
gccgaggtgccaccggatcagatattaccgtctttgtatctgctagatagtattgtgaag
aacataggtggggaatatgttgagcattttgcaactaggttgcagagtgtatttgttgat
gcatactacagagttcatccaaaccagtatacttcaatgaggcgcctttttcgtacctgg
tggccagtatttccttcttctgtgcttcatggcattgaggatgaccttcaattttctccc
tcagagactaaccgtcccaccacatcgacaaatcaaacagagtcattatctcctaggcta
tctcatggcatacatgtaaatcctaaatacctagaagcacagcataagttcaagcaggcc
aatgtggcgcaccagtcagcagctcgggacactacacaaatgactgatgtgcaggaggat
ctgataaatggattaccatcaaatagttcacgaggacggccttcaatgtttcagaaatct
tctttacaatatgctgataatcctgatcaacaagagacgtttcgacctcttgctggaaca
ataagggtgacatcaccacatctcttgagcacacattcatctgatgtgaatctagatggg
ccattagtcaattcaaggagaaacatgtccagatcaccaccccttgatgtgttccctaga
aatgtgtcccccaagagagcgctagagaggttaccaccatctcattctgtattgggacct
gatcccagaaaattgcctgaccgaaatggcaggttaagattggtttttgatgatggtgta
cagcggtctacgatcagtatgcttgatgaagagtacaggaagcaaagtgcaagggaactt
attgatgcatatgggaattgtcaaggccgagatgctgatgaacgacttcctaaagtgcag
cgcctggatccaaatggtatggctagcagatctagtgcacgaaattggttaacttcagag
gaagaagagtattcgtgggaggatatgagtccaactttgactgatcgagtcagaagcagc
atgccatcttttcctcctggaaccatgagagccggatttcctggggcaaatgcagggcta
ctggaatctgatgttgggaggcacaatttcccaagccaaattactagatcatcggttgat
ggtccaccatataatcttgaagataggattacaactgcaagccatgttgacatttccaca
aggagatatccaagcaattttggggttcagaatggagctcttttggagtaccagaattct
gaagatactctaaatcatgggagaattgataccatgccagctccaccttggcagaagcct
actggtctgccattgcgaatacaggcacctcaacatccatcagtacttgatagaatacca
cagcctgccaatggtgaaatggcagtcaagaggttggacattagtggcacatacaatggt
ttaaatgtagataatatacccttagtggagaagcacaggtcatcaccttctgctccgata
gaatggcttcctcttcatcatacccgatctcaaactttaccactaattccacctgatacg
aaacatgttagaagtgcaccaaatagcttagaaattagttcttttgttagccaaggagct
agttcatcagtatttgttcctcggcatcagtatgatgccttggatcggaaaacggttacc
ggtaacttagctcaaccaccttatcagcaccaagatttgttgccatcaagccaacaaaat
caaggtacaattttgggaaaccaagctcatcctcatcgccccacacagttacatccccat
ccccattcccattctcaccatcaggagacttttagaagctttgcctctggcatgtctgta
tctccattccaaggacaaggaggtaatgcaaccatgacacctgtttccgttctgccaact
tctttttctgtaccacctgctgtgccaccctacggtgtgccaccattaccgcccggacca
ccacctgtcccactgcagatgggttcatcatcatcacaagttggtggccctcaaccattt
gtctctggactgttgagtaaccttatgcggcatggtgtaatttcacttgaaccacctagc
caatcgcaggattctgttggagttgacttcaatgtagacctcaagttacggaatgagtct
gtcatcaatgctttgtatcaggatctttcaaggcagtgtaaaacatgtggccttcgattt
aaatgccaagaggagcatcgtgctcacatggactggcatgttacaaaaaatagaaattca
aagaaccgtaaacaatcttcacgtaaatattttgtcaccgtgggggaatggttaagagca
gcagaaacagtaggaaacgatggagttcctgcttttgtgccctcagatccagtcccagac
agaaaggaagagaaagaaattgctgttcctgcggatgaggagcaaacagcctgtgcatta
tgtcaagagccatttgaagatttctacagtgatgagactgatgagtggatgtacagaggt
gcagtctacatgaatgcgccagatggtaatatcgatggtctggaaaggtcacagttggga
cctattgtccatgctaaatgtcgatctgggcccagcaatacttcttag
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