Sorghum bicolor (sorghum): 8071295
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Entry
8071295 CDS
T01086
Name
(RefSeq) transcription factor APG isoform X1
KO
K12126
phytochrome-interacting factor 3
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04075
Plant hormone signal transduction
sbi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
8071295
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
8071295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sbi03000
]
8071295
Transcription factors [BR:
sbi03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
8071295
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GFIT
Motif
Pfam:
HLH
Motif
Other DBs
NCBI-GeneID:
8071295
NCBI-ProteinID:
XP_002439246
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Position
9:3351697..3354685
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AA seq
543 aa
AA seq
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MPVSISKICRTGPGDELAELLWDHGPALRRPPPPFQPFTCSAAGSSRSHELKRHPVPVPV
PLGMHTHGAGLGLGGLPVHDDEDDAVPWLHCPVVVDDGDADTAPLPPEYCASLLSEYSEA
AAPAATASHAAAVVPAAPPPPEAAVANKLAPPSATGSGVGEGVLNFTFFSRPLQRPQAAS
AAASHPVESTVVQAATNRLRSTPLFSEQRMAWLQPPKAPRATAAAAATPPPPPPPPPAPP
QLAPMLPDTRHGETVAQPRSQPDARPPDAAAVTASSVCSGNGDRSQLKRSCHLAADCSVS
PDEDMDDEPGATRRSAARSAKRSRTAEVHNMSERRRRDRINEKMRALQELIPNCNKIDKA
SMLEEAIEYLKTLQLQVQMMSMGTGLCMPPAAMLLPAMHQHMQALHHHHHHPMAHFPHLG
MGLGYGMGMGMGATAAAGFDMLPRVAAGAHFPCPPMAMPPPPGAAMFGVPGTGMATLPAA
FAHMAGAAPAGQMEAGAGDAAPAAAAAAAAAAPARPEEAEHPPVRGVAQGDQEAQQQQHP
KQT
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtttcgatctccaaaatctgtaggaccgggccgggcgacgagctggccgagctg
ctgtgggaccacggcccggcgctgcggaggccgccgccgccgttccagcctttcacctgc
agcgccgccggcagcagcaggtcacacgagctcaagcgccaccccgtccccgtccccgtc
ccactgggcatgcacacgcacggcgccgggctcgggctcggcggcctccccgtccacgac
gacgaagacgacgccgtgccgtggctgcattgccccgttgttgtcgacgacggcgacgcc
gacacggcgccgctgcctcccgagtactgcgccagcctgctgtccgagtactcggaggcg
gccgcgccagcggccacggcctcccacgccgcggccgtcgtcccggccgcgccgccgccg
cccgaggccgccgtggctaacaagctggccccgccgagcgccactggcagcggagtaggg
gagggcgtcttgaacttcaccttcttctcgcggcctctccagcggccgcaggcggcgtcc
gcggccgcgagccaccccgtcgagtccacggtcgtccaggcggcaacgaaccggctgcgg
agcacgccgctgttctccgagcagaggatggcgtggctgcagccgcccaaggcgccgcgc
gccacggctgcagcggcggcgacaccaccgcctcctccaccaccaccgccggcgcctcct
cagctagcgcctatgctcccagatacccgccatggagagacagtagctcaaccccgctcg
caaccagatgcaagacctcccgatgcggcggcggtgacggcctcttcggtctgctccggc
aacggtgaccggagccagctcaagaggagctgccacctggccgcggactgctccgtcagt
ccggacgaggacatggacgacgagcccggcgcgacgagaaggtcggcggcgcggagcgcc
aagcgcagccgcaccgccgaggtgcacaacatgtcggagaggaggagacgggaccggatc
aacgagaagatgcgcgccctgcaggagctcatccccaactgcaacaagatcgacaaggcg
tcgatgctggaggaggcgatcgagtacctgaagacgctgcagctccaggtgcagatgatg
tcgatggggaccgggctgtgcatgccgccggcggcgatgctgcttcccgcgatgcaccag
cacatgcaggctcttcaccaccaccaccaccaccccatggcgcacttcccgcacctcggc
atggggctgggctacggcatgggcatgggcatgggcgccaccgcggcggcggggttcgac
atgctcccgcgcgtcgcggccggcgcgcacttcccgtgcccgccgatggcaatgccgccg
ccgccgggggcggccatgttcggcgtgccggggacagggatggccacgctgcccgcggcg
ttcgctcacatggccggtgccgcgccggctggacagatggaagctggtgccggtgacgct
gctcctgctgctgctgcggcggcggcggctgctgctcctgcccggccagaagaagcagag
cacccgccggtccgcggcgtggcacagggcgatcaggaggcgcagcagcagcagcacccg
aagcagacgtga
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