Sorghum bicolor (sorghum): 8073056
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Entry
8073056 CDS
T01086
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8073056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8073056
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8073056
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8073056
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
8073056
NCBI-ProteinID:
XP_002437048
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All DBs
Position
10:42245547..42246401
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AA seq
284 aa
AA seq
DB search
MSLNFGSLQFLALESPSQAVHPAGTPTSPLTSSSPPFVMAHYASLYHGGASMPPLPPGIP
VRSVWKDNLELELRFLHSFVHNARYAAVNIHYPGVIHNGSQKHTSQTADERYSVVKANVD
ALKPIQVGLAIYNDFGHIVAWEFNLRGFHPVTDPHAANSVGYLQERSLSFDEHQVHGITA
LRLATGLSGCGLFRRPQISWTTYAGLYHVGYLMKYLSMGNQLPDSLGGFLDMVRQFLGQD
VYDVARIAVDCALPPGLEHVASSLFLVPAALSPRLAGAGSLLAL
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttaattttggttcgctgcagttcttggcattagaatcgccatcgcaagctgtg
catccggccggcacgcccacgtctcctctcacatcatcgtcgccacctttcgtcatggca
cactacgcgtcgctatatcacggcggcgcttccatgccgccgctgcctccggggatcccc
gtccgcagcgtatggaaagacaatcttgagctcgaactgcgcttcctccatagctttgtt
cataacgcccgctacgccgcggtgaacatccattaccccggcgtcatacacaacggcagt
cagaagcacacctcgcagacggctgatgagcgatacagcgtggtcaaggccaacgtcgac
gctctcaagcccatccaggttggcctcgccatctacaacgacttcggccacatcgtcgcc
tgggagttcaacctccgtggcttccacccggtgacggacccgcacgccgccaactccgtc
ggatacctccaagaacgcagcctaagcttcgacgagcaccaggtgcacggcatcacggcg
ttgaggctagccacgggactcagtggctgcggcctgttccgccggccgcagatatcctgg
accacctatgccggcttataccacgtcgggtatctcatgaagtatctgtctatgggtaac
cagctccccgacagtctaggtgggttcctcgacatggtgaggcagttcctcggccaagac
gtctacgacgtggcccggatcgccgtcgactgcgcgttgccgccgggactggagcatgtg
gcgagcagcctctttttggttccggcggccctgagccctcggctcgccggcgcgggcagc
ctactcgcgctgtaa
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