Sorghum bicolor (sorghum): 8073843
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Entry
8073843 CDS
T01086
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8073843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8073843
Spliceosome [BR:
sbi03041
]
Complex B
Other components
Prp19-related factors
8073843
Complex C
8073843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_3
zf-CCCH_4
RRM_3
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
8073843
NCBI-ProteinID:
XP_002454402
UniProt:
C5Y082
A0A921UM53
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All DBs
Position
4:complement(60876470..60880344)
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AA seq
491 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLRAEYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRRARAGIDYDSSYGKARPNDTILKLQRTAPYYKRNRAHVCSFFVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLTPPDDETIRTLYIGGLDNRIT
EQDLRDQFYAHGEIESIRMVLQRAIAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAPKPEEDESGRQGQVSHGGLLPRAVISQQQSGDQPQPPGMEGQQQQAAPASYYFNIPA
PPAAERTLYPSMDPQRMGAIVKSQDGEGKPGPQQAGQAQPSSSSAQGGYPAPPPYYHGQY
PPYYPPPPPYGGYMPPPRMPYPPQYPPYQPMLAQPAQAQASSSQQPPQEGAGQQPPHGPP
AQQQPQQPIQN
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggctgctgcgggacgcgcaggcggacgggtgggagcggtcggacttcccc
atcatctgcgagtcatgcctcggcgacaacccctacgtccggatgttaagagctgagtat
gacaaagagtgcaaaatttgtgcacgtccttttactgtctttcggtggcgccctggtcga
gatgcaaggtacaagaagactgagatttgccagacatgttgcaagctaaagaatgtctgc
caggtctgcctgctggatcttgaatatggcctgcctgttcaggtccgggatacagcactc
gctatcaattctaatgatgcaattccaaggagtgatgtcaatcgtgaatattttgcagaa
gagcatgataggagggccagagctggcatagactatgattcttcttatgggaaggctcgt
ccaaatgataccattctgaagcttcagaggacagcaccatattacaagaggaacagagct
catgtttgtagtttctttgtgcgtggtgaatgtacaagaggagctgagtgcccttatcgt
catgagatgcctgaaactggggagttatctcagcagaacattaaagatcgctactatgga
gttaatgacccagttgcactgaaacttttgagcaaggcaggtgagatgccatccctgaca
ccaccagatgatgagactataaggaccctctacattggtggactcgataacagaataact
gagcaggatttgagggatcaattttatgcccatggtgagattgaatctataaggatggta
cttcaacgtgcaatcgcatttgtgacatatactacaagagaaggcgcagagaaggctgca
gaggagcttgctaacaagctagtcatcaagggtgtgcgcctgaagctgatgtggggcaag
cctcaggctccaaagcctgaggaggatgagtctgggaggcaggggcaggtttcccatgga
ggactgctccctagggctgtcatatctcagcagcagagcggtgaccaacctcaaccccct
gggatggagggccaacagcaacaggctgcaccagcatcctactacttcaacattccagca
ccaccagcagcggagcggactctgtacccatccatggatccacagaggatgggtgctata
gtaaaatcacaggacggtgaaggcaaaccagggccgcagcaagctgggcaagctcagcca
tcaagcagctcagcacagggtggctatcctgcaccaccgccatactaccatggtcagtat
ccaccatattatccacctccaccaccatatggtggctacatgcctccaccacgcatgccc
tacccaccacaatatccaccttaccagccgatgctagcacagccagcacaggcacaggct
agttcatctcagcaaccaccgcaagaaggtgcaggacagcagccgcctcatggccctccc
gctcagcagcagccgcagcagccaattcagaactga
DBGET
integrated database retrieval system
