Sorghum bicolor (sorghum): 8074455
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Entry
8074455 CDS
T01086
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH isoform X1
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sbi04121
]
8074455
Enzymes [BR:
sbi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
8074455
Ubiquitin system [BR:
sbi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
8074455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-1st
SHPRH_helical-2nd
Helicase_C
PHD
PHD_5
zf-RING_UBOX
TPR_12
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
8074455
NCBI-ProteinID:
XP_021309523
LinkDB
All DBs
Position
2:complement(76633408..76644726)
Genome browser
AA seq
1674 aa
AA seq
DB search
MGRKKSRPVRAAGAASAAAEADPYAPSPSGSTKRGTKGEARRDVCVEVDRTTWAQADVDH
RDVAEVVLRDVSVSGDGDGEEGALEEAFGASTFSLRLRVRDAPEEGFRMGQWPVVPSDCV
LLEYVVHGGREGKHPEYVVSGCFDGPDEGVSGLAHLVSLRFVTLRVQSFRAFQDMGEARV
ESFRVRVEVMEQAFSACDSLLEVARHPWRKSLMNMMAWLRPEVTTSAAIYGLDDLGVPID
DGGNADLAPKSDSQFDLAAFYEAVKPSTNAEQLKEDLPDLVPQLRPYQLRAAHWMVQREK
GNTPHQGYANSAPYCVPIDFIHKNSRMFYNPFNGNISLQPEPSPPYVSGGILADEMGLGK
TVELLACIFAHRRPISLDFSVSQNKTEMDQIKRQKVERVECICGAASESSAYMGLWVQCD
ICDAWQHADCVGYSPKKDILFDDTTEDVASTNKKSTMKSGIRRKKKPRCSIVETEDKYVC
GLCLELTEATQTNIFSHATLIVCPAPILAQWHSEITRHTRPGSLKVCIYEGARNLDPATI
QKNEMAEISTADVVLTTYDVLKEDLSHDFDRHDGDRRFLRFQKRYPVIPTVLTRIHWWRL
CLDEAQMVESSKTSVTEMALRLNAQHRWCITGTPIQRRLDDLFGLLRFLRTNPFDTYRWW
VDIIRDPYERGNGVAMNYAHNFLREIMWRSSKIHVSGELQLPPQEECFSWLIFSSIEEYF
YKKQHATCMDHAHQIIRSLRNDTNRRESISDSNAVLNVYLSNDDIAKFLVPLLKLRQACC
HPQVGSSGLCSLQHNPLSMDEILQVLIGKAKIEGEEELRKIVVALNGLAGLAVIEQRNQE
AISLYKEALALAHENVDDFRVDPLLNLHINYNLAELLRISSEYLQECPLKKLASEVSISR
KRKETNTVETNVLCVKRNKICENSVSSLTANGLEASEEDENTIGQACITGDVGVENVAGC
HSSSECFANDCLRKTCNEITEKYLSVFTSKLVVAQKDFNASFTEVLNKTKELQSGHMNWW
LHALDCIEQNNISADELIKKIDNSSSKSTTGLGSRGISSRIKSITGLKYAIQADIDSLKS
SRQHLMDRLLEVDKTMDNPRDEDIEGQRYCPKCYDGTGSLCIQCELDELFQRYEARLFLV
KKSTNDSVIDSVEEAQDLQRRKYELNHFFRNRKSEPGYDNNNPRSARENIQVYRHPSRTE
TALRVIRNHSKTVLGKQYSAIAKKHLLLFEAMRKEFPQARFLSIAQTQLLRAHDEIKMSI
SRLQLKEKDDEPSASNIVTREELIPYNVQFTSEKFMSLSSLARVRGQLRYLKGLAVCNKK
THNQHGESLAKAGDAVDTVASCSVIGQTVSDFRNEPCPICQEKVFDQKMVFQCGHFVCCK
CCLYMTEQTAAQFGKRKKWIMCPTCRQRTDIENVAFVVEKAWDKPEKSTEDLAESTISVQ
GSYGTKIEAVTRRILRITSTDGTAKVLVFSSWNDVLDVLEHSLAANNISYVRMKGGRKSQ
AALSRFKGQVSNVNVDEVKKTASNMKPVQVLLMLIQHGANGLNLLEAQHVILVEPLLNPA
AEAQAISRIHRVGQDKSTFVHRFIVKKTIEESIYKLNRSRAVCSTINRKSKNFKDEPVLT
LKDVESLFPMTGPDEPLEQADQDYGDSLRSLPPSVAAGLAAERRRIMEQHDNQQ
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaagaaatcgcggccggttcgagctgcgggcgctgcctctgcggcggccgag
gccgacccctacgcgccgagccctagcggcagcacgaagcgtgggaccaagggcgaggcg
aggagagacgtctgcgtggaggtggataggaccacgtgggctcaagccgacgtcgaccac
cgcgacgtcgccgaggtggtcctccgcgacgtgagcgtctccggcgacggggatggggaa
gaaggtgcgttggaggaggcattcggggcgtcgacgttctcgttgcgtctgcgggtgcgt
gacgcgccggaggaggggttcaggatgggccagtggcccgttgtgccgtcggattgcgtg
ctcctagagtatgtcgtccatggtggccgtgaagggaagcatccagaatatgtggtctca
gggtgttttgatggtcctgatgaaggtgtatcgggtctcgcccatttggtgagcttgaga
ttcgtcacgctccgggttcagtcgttcagagcatttcaggatatgggtgaggcgagggtt
gagtcgtttcgggttagagtggaggtgatggaacaggctttcagcgcgtgcgactcactg
ctggaggtggctaggcatccatggaggaagagtttgatgaatatgatggcttggctgcgt
cctgaggtcacaacatcggctgccatatatgggttggatgaccttggtgtgccaattgat
gatggtggtaatgctgatttggcacctaagagtgattcacagtttgatcttgccgctttt
tatgaggccgttaagccttcgactaatgcagaacagttgaaagaggatcttcctgattta
gttcctcagctcagaccatatcaacttcgtgcagcgcattggatggttcaacgtgaaaag
ggaaatacaccccatcaaggatatgctaattctgcaccatattgtgttcctattgatttt
attcacaagaattccaggatgttctataatccgttcaacggaaatatttcattgcaacca
gagccttctccaccttatgtctctgggggcattttggctgatgaaatgggcttggggaaa
actgtcgagcttttagcgtgcatttttgctcatcgtagaccaatttcattagacttctct
gtctcccagaacaaaacagaaatggatcaaattaagaggcagaaagtagaaagggttgag
tgcatctgtggtgctgcgagtgaaagttctgcatacatgggtctatgggtccaatgtgac
atttgtgatgcttggcaacatgctgattgtgttggttactcacccaagaaagatatactt
tttgatgataccactgaagatgtagcatcaacaaacaaaaaaagcaccatgaagtctgga
attagaaggaaaaagaaacccaggtgttctattgtcgagacagaagacaaatacgtttgt
ggactgtgcttggagcttactgaagcaactcaaactaatatattcagccatgctacattg
atagtatgccccgcaccaatattggcacaatggcactctgagattacccgacacacaagg
ccaggatctctgaaagtttgcatttatgaaggtgcaaggaacttggatcctgctaccatc
caaaaaaatgagatggctgagataagtactgctgatgttgtcttgacgacctatgatgtc
ttgaaagaagatctatcacatgattttgaccgtcatgacggtgatcgccgtttcttgaga
tttcaaaagagatatcctgtcattccaactgtcctgacaaggatccactggtggcggctt
tgcttggatgaagctcagatggtagagtcaagcaagacttctgtgacagagatggcattg
aggctaaatgctcaacaccggtggtgtatcacaggaaccccaatacaacgcaggcttgat
gatctcttcgggcttctacgttttcttaggacaaacccatttgacacatatagatggtgg
gtggacattattagagacccgtatgagagggggaacggagtagcaatgaattatgcacac
aatttcttgagggaaatcatgtggcgttcctccaaaattcatgtctcaggtgaactgcag
ctgcctccgcaagaagagtgtttttcatggctcatcttttcttccattgaagaatatttc
tataagaagcagcatgcaacctgcatggaccatgcacatcaaattattagaagtttgaga
aatgacaccaatagaagagaatcaatttcagattcaaatgctgtgctaaatgtttacctc
tccaatgacgacattgccaagttcctagtcccactgctgaaacttcggcaggcatgttgc
cacccacaagtggggagttctggtctctgctccctgcagcataaccctttgtcaatggat
gaaattttacaggttcttattggtaaagcaaaaattgaaggagaggaagagctgagaaaa
attgtagttgccctgaatggtcttgccggattagctgttattgaacaaaggaaccaagaa
gctatttctttgtacaaagaagcattggcattggctcatgaaaatgttgatgatttccgt
gttgaccctctattgaatcttcatatcaactacaatcttgcagaactgcttagaattagt
tctgaatatttacaagaatgcccattaaaaaagctggcttctgaagtttcaatcagccga
aaaagaaaggaaactaacactgttgagacaaatgtactttgtgtgaaacgaaataaaata
tgtgaaaacagtgtttcgagtttgacagctaatgggttagaagcatctgaagaagatgaa
aacacaattggacaagcatgcataactggagatgtgggagtggagaatgtcgctggatgc
cactcttcatcggaatgttttgctaatgactgcttgaggaagacttgcaatgaaatcaca
gaaaaatacttgtcagtttttacttcaaagctggtagtagcgcagaaggattttaatgca
tcattcacagaggtcttgaataaaactaaagagctacagagtgggcatatgaattggtgg
ctgcatgctttggactgcattgaacagaacaacatttctgctgatgaactcatcaagaag
attgataattcttctagtaagagcaccactggtttgggttcaaggggaatatcttccagg
attaaaagtatcactggattaaaatatgcaattcaagctgacattgattctctaaaaagt
tcgaggcaacatcttatggatagacttctggaagttgacaaaacaatggataacccaagg
gatgaggacattgagggccagcgatattgtccaaaatgctatgatggcactggttcttta
tgtatccaatgtgagctagatgaactctttcagaggtatgaagcacgtctgtttcttgtt
aagaaatcaaccaatgattctgtcattgattcagtagaagaagcacaggatctacagagg
cgaaaatatgagctcaatcacttcttccgtaatagaaaatctgaacctggctatgacaat
aacaatcctagatcagctcgagaaaacatacaggtctacaggcatccttctcgaaccgag
actgcattaagggttatccggaatcactcaaagacagtattgggaaagcaatattccgca
attgctaaaaaacatttacttctttttgaggctatgcgcaaggagtttcctcaagcaagg
tttctgtcaattgctcaaacccaattattgcgtgctcatgacgagatcaagatgtccatc
tcgagacttcagctcaaagagaaagacgatgaacctagtgcttccaatattgtaactaga
gaggaactcataccatataatgtgcagtttacaagtgaaaaattcatgtcactctcatct
ttagcccgtgttagaggtcaactccggtacttaaagggattggcggtatgtaacaagaaa
acacataaccagcatggtgaatcattggctaaagcaggcgacgccgttgatacagttgct
tcatgttcagtcatagggcaaactgtctctgattttcgtaatgaaccatgccctatatgc
caggagaaggtttttgaccagaaaatggttttccagtgtggtcattttgtatgctgcaag
tgttgtctttacatgacagaacaaactgcagcccaattcggaaagcgtaaaaaatggatt
atgtgtcccacatgccgtcagcgaacagatattgagaatgttgcttttgtagttgagaaa
gcttgggacaaacctgaaaagagcactgaagatttggctgaaagcactatttctgtccaa
ggttcatatggaacaaagattgaagctgttacaagaagaatcttgagaatcacttcaact
gatggaacagctaaagttcttgttttctcaagttggaatgatgtactggatgtactagag
cactccctcgctgctaacaacatttcatatgttcggatgaaaggaggaagaaaatcacag
gcagccctctcccgattcaagggtcaggtgagcaatgtaaatgtagatgaagtgaaaaag
acagcctccaacatgaagcctgttcaagtacttctgatgcttatacagcatggagcaaat
ggtcttaatctactagaagcacaacatgttattctagtggagccattactaaaccctgcc
gctgaggcacaagctatcagcaggatacatagagttgggcaagacaaaagcacatttgtt
caccgttttatagtgaagaaaacaatagaagagagcatctacaaattgaacaggagcaga
gctgtctgctctactataaaccgtaaatccaaaaacttcaaagatgagcctgttttgacg
ctgaaggatgtggagtcactattcccgatgaccgggcctgatgaacccctagaacaggca
gatcaagattatggtgatagcttgagaagtttgcctccatctgttgcggctgggttagct
gctgaaagaaggcgaataatggagcaacatgacaaccagcaataa
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integrated database retrieval system
