Sorghum bicolor (sorghum): 8075217
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Entry
8075217 CDS
T01086
Name
(RefSeq) protein NRDE2 homolog
KO
K26109
nuclear exosome regulator NRDE2
Organism
sbi
Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8075217
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
8075217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_19
Motif
Other DBs
NCBI-GeneID:
8075217
NCBI-ProteinID:
XP_002452899
UniProt:
C5XTI0
LinkDB
All DBs
Position
4:65055321..65064345
Genome browser
AA seq
1149 aa
AA seq
DB search
MEPSPEPSPPVTTATFPAAGEGHETYPPTVSSSLFPLFPLSASSSSAPTAESQWLSNPSF
SFDASSLNVPATTSSSLPPPLSPSSDEDTPLQRAPAKYELVPSSPSSDEERGSRRKESGR
RKRRREKERYDGAAASRKAVVRTWAGSQTKPAKDYYVDAKGDHDNLAFGSLYRMDVARYR
SQNMLEALGLNRLRFGSSHIDFDSDLDGIDNKVRAGGRYYSAKNAVFERNRGFKHLKLFK
GNTSVMLAEDFVPFDTQSLPVKSTAAEQELEESWEDEILRRTREFNKMSRERPHDEKVWL
AFAQFQDKVASTQPQKAARLQTTERKISILEKAVELNPDSEELLLCLLKSYGKRDSTETL
LAKWEQVLTKHPCSCKLWKQYLLLCQGEFSRFKVSEIRKSYVYAVQALSAACTKLCRQDN
ESMDSKSSSLVQLEVGLVDIFVNLCRFEWQTGHRELATGLFQAQMEFSLFAPPLYLTTSS
KQRLFEHFWNSGGARIGEDGALGWSEWLAKDEESRQKLSMQENSQETETGGWSGWFDPSV
GNTDANDLSNKSLEPSLSDGNDAEDLDAEDSPAQDDVESLLKKLGIDVDAESNSEVKDAE
TWNRWALMELSRDNEQWMPLHENSGDAPSGEDNDQLSRVILFEDVSEFLFSLSSEEARFS
LMCQFIDFYGGKISRWTSTNSPSWLDRILSLEMITNDILEDLSAVSDVVNKNQSSYSYKL
ESLLGSMHDLSQRPGLMKFLRNAILLLLGVFPRNHVLEEAVLVTTQMFAPQENSSSTQAN
ASRALAKSMLKKDRQDFLLCGIYGRTEAMNGNIEQARKIFDTALLSTEATTEDLRKKVPI
LYLWYSEMEITVSASRNNSDSMHRAVYILSCLGSNLKYSPFVSPISRLQVLKARQGFKEQ
IRSLQSAFSCGHIKEESVALICSASLFESMTTGCSSGLEVIEETFPMALSESSHNLECED
LWVYYIKLLQKNLNRLSLSRVWPSILQGVHKYPYNPKSYSAMLTLSYLYSVSNNLRLTLD
KCSQRDPSVITLLFALSFEWSKAGSDNRIHSLFERALADDKLQKSVLLWRCYLAYEAEIA
CNSSAARRVFFRAIHACPWSKRLWLDGFQKLGSVLTLKELSDLQEVMRDKELNIRTDIYE
ILLEDETDT
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggagccctcgccggagccttcgccgccggtcaccacggccaccttccccgctgccggc
gaaggacacgagacgtacccgcccacggtgtcatcctctctattcccacttttccccctc
tctgcctccagctcctccgctcccacagccgaatcccagtggctttcaaaccctagcttc
tccttcgatgcctcctccctgaacgtcccggctaccacctcctcgtcgctcccgccaccg
ctaagcccctcgtccgatgaggacacgccgctgcagcgcgcccctgcgaaatacgagctg
gtgccttcgtcgccgtcctccgacgaggagagggggtcgcggaggaaggagagtgggagg
aggaaacggaggcgcgagaaggagcgctatgatggggcagcggcgtcgcggaaggctgtg
gttcgcacctgggctgggtcgcagacgaagccagctaaggattactatgtcgacgcgaag
ggcgaccatgataacctggcttttggatcactttacagaatggatgttgcacgctacaga
tcccagaacatgctggaggcacttggtttaaatcgtttgaggtttggttcatcacatatt
gattttgattcagacttggatggaatagataacaaagtaagagctggaggccgttactat
tcagcaaaaaatgcagtttttgaaagaaataggggtttcaagcatctgaaactatttaag
ggaaacacctctgtaatgcttgctgaagattttgtcccctttgatacacaatcacttcct
gtgaaaagcacagctgcggaacaggagctagaggaatcttgggaagatgaaatacttcgt
cggactagggaattcaataagatgtctcgtgaacgtcctcacgatgaaaaagtttggctg
gcctttgctcaatttcaggacaaagttgctagtactcagccacaaaaggctgctcgttta
caaactactgaaaggaaaattagcatattggagaaggctgtggagcttaatccagatagt
gaggaattattgctttgccttctgaagtcatatggcaagagggacagcactgagactcta
ttggctaaatgggagcaagtacttacgaagcatccatgtagctgtaagttgtggaaacag
tatctgcttctgtgccaaggggaattctccagattcaaagtttctgaaattcggaagtcc
tacgtgtatgctgtacaggctctatctgcagcttgcaccaagctatgtaggcaggataat
gaaagcatggattccaaatcttcttccttagttcagctagaagtggggttagtggatata
tttgttaatctgtgccgatttgagtggcagacaggacatcgggaattagcaactgggcta
tttcaggcgcaaatggagtttagcttatttgcccctcctctgtatctgacgacaagcagt
aagcaaaggctctttgaacacttctggaacagtggcggcgccagaataggggaagatgga
gctcttggatggtctgaatggttagcaaaagatgaggagagtagacagaagttgtctatg
caagaaaattcacaagagactgaaacaggaggctggagtggttggtttgatccttctgtg
ggtaatactgacgcaaatgatttgtcaaacaaatcactggaaccatcattgagcgatgga
aatgatgccgaagatcttgatgctgaggactcacctgcacaagatgatgttgaatccttg
ctaaaaaagcttggtatcgatgtagatgcagagtccaatagtgaagttaaagatgcagaa
acctggaatagatgggccttgatggagttgtctcgggacaatgagcaatggatgcctctt
catgaaaattctggtgatgctccatctggggaagacaatgaccagctttccagagtaatt
ttgtttgaggatgtatctgagttcctgttttcgctatcttcagaggaggcccgcttttct
ttgatgtgccaatttattgatttttatggtggcaaaatctcaagatggacatccacaaac
agtccgagttggcttgatagaattttgagcttagagatgattacaaatgacatcctggaa
gatctaagtgctgtatctgacgttgtaaacaagaaccaaagttcatatagttacaaattg
gaatcattactgggaagcatgcatgacctttcacaaaggccaggccttatgaagtttctc
agaaatgcgatactgcttctgcttggtgttttccctcgtaatcatgtcttggaggaagct
gttcttgttactacccaaatgtttgctcctcaagagaactcctcctctactcaagctaac
gcatcacgggctttggccaaaagtatgttgaagaaagacagacaggattttttgctttgt
gggatatatggacgaactgaggcaatgaatgggaacattgaacaagcaaggaagatattt
gacacagcactattatcaactgaagcaactactgaggatcttaggaagaaggttcctatc
ctttatctttggtattctgagatggagataacagtgtccgcttcaagaaacaactctgac
tcaatgcatcgtgcagtttacatcctatcctgcttagggagcaatctaaaatattcccct
tttgttagccctatttcaaggcttcaggtcttgaaggctcgccaagggtttaaagagcag
attagaagcttacaatctgcattttcctgtggtcatataaaagaagaatcagttgctctg
atctgctcagcttctttgtttgaaagcatgacaacaggctgttcctcggggcttgaagtg
atagaggagaccttcccaatggcactttcagagagcagtcataacttggagtgtgaggat
ttgtgggtgtactacatcaaactgcttcagaaaaatcttaaccggttgagtctatcaagg
gtctggccaagcatattgcaaggagtgcacaaatatccctacaatccaaaatcatattca
gccatgttaaccctgagctatctttacagtgtatccaacaatctccgtctcacactcgac
aaatgtagtcaaagggatccttctgtaatcaccttgctctttgctttgtcctttgaatgg
agtaaagccggatctgacaatagaatacacagcctctttgagagagctctagctgatgat
aagttgcagaagtctgttctgttgtggcgctgttatctagcctatgaggcagaaatagcc
tgcaactcttctgcagcacggcgtgtgttcttcagagctatacatgcctgtccatggtct
aaaagattatggcttgatggtttccaaaagttgggctcggttctgacattgaaggagcta
tcagatctccaggaagtgatgcgtgacaaggaactaaacatccgcactgacatctacgag
atactcctagaagacgaaacagatacatga
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integrated database retrieval system
