Sorghum bicolor (sorghum): 8077309
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Entry
8077309 CDS
T01086
Name
(RefSeq) pentatricopeptide repeat-containing protein At3g18110, chloroplastic
Organism
sbi
Sorghum bicolor (sorghum)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PPR_2
PPR
PPR_3
PPR_1
PPR_long
TPR_14
TPR_19
RNPP_C
APAF1_C
DUF6648
Motif
Other DBs
NCBI-GeneID:
8077309
NCBI-ProteinID:
XP_002438011
LinkDB
All DBs
Position
10:complement(6046034..6053406)
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AA seq
1446 aa
AA seq
DB search
MSPMAVSSSPLPFLSSSSSFTCHLRRAGTATATAASSASEDFDYPLADPSVRWPHLRFPH
LPAPRFPATVTAAPPVPARPPPQEVEDPAATSASASAPSLVEPLDARAHRGRVKKLSKLA
LRRAQDWRARVAGLADAVLALPPGAPVDDVLDGARATPDEVAFVVRAVGESSWRRALDAF
EWLARSTAPASRAVAVVLGVLGRARQDSIAEEVFLRFAGEGATVQVFNAMMGVYARSGRF
DDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYN
TLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEK
GFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEITYNTMIHMYGKMGRLDLA
VGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICA
YAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGETEKMLRLYRTMMNDNYRPD
DDMYQVLLVALAKEDKCEEIEEIIQDMELLCQMSLGVISTILIKARCVSQGGKLLKKACL
QGYKPDAKSLWSIMNAYVMTEKHEEGLSLLECIRDHVSSSQDLISECSIILLCRKQTSIS
AYEQYSQRLMLKYPGQNCNLYEHLITCLVEAELFSEACQVFCDMQFIGIEASKNIYESII
STYCKLGFPETAHGLMDDALQSGIPLNILSCRVIIIEAYGNIKLWQQAEILVKGLRQASG
IDRRIWNALIHAYAESGLYEKARAVFDNMIKTGPLPTVDSVNGMMRALIVDGRLDELYVV
VGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLCH
HNRFRDVELMIAEMEGAGFKPDLSIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDT
YNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMR
SKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPH
EAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWTCFI
RAASLCEQTADAILLLKSLQDCGFDLPIRLLTERTPSLLSEIANYLEELEALEDSAALNF
VNAVEDLLWAFECRATASRIFQLAVERSIYRDNVFRVAQKDWGADFRKLSAGAALVGLTL
WLDHMQDASLQGSPESPKSVVLVTGEGEYNMVSLRKTIRAYLLEMGSPFLPCRARSGRFV
VKAYSLKMWLKDSPFCMDLELKDAPALPKLNSMKLIEGYFMRAGLVSAFKDIHEKLGEVW
PKKFSRLALLSEECRDEVIKADIKGRKEKLERMKKKGIVTARKSKRRAQRGKFVREQEQN
MKVVLD
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgatggcagtctcctcctcaccattacccttcctctcctcttcttcctccttc
acgtgccatctccgccgagcgggcaccgccaccgctacggcagcgtcatctgcttccgaa
gacttcgactaccctctcgccgacccttccgttcgatggcctcacctccgcttcccgcac
ctccccgcgccgcgcttccccgccaccgtcaccgcggcacctccggtccccgccagacca
ccaccccaggaagtggaggaccccgcggcgacctccgcctccgcctccgcaccttcactc
gtggagccactggacgcgcgtgctcatcgcgggagggtgaagaagctgagcaagctcgcg
ctgcggcgggcgcaggactggcgcgcgcgcgtggccgggctcgcggacgccgtcctcgcg
ctgcctcccggggcgcccgtcgacgacgtgctcgacggcgctcgggcaacgccggacgag
gtcgccttcgtcgtgcgcgccgtcggggagagctcctggcggcgcgcgctggatgccttc
gagtggctcgcccggagcaccgccccggcttcacgcgccgtcgccgtcgtccttggcgtc
ctcggccgcgcgcgccaggattcgatcgcggaggaggtcttcctccgcttcgctggagag
ggcgccactgttcaggtgttcaatgccatgatgggcgtttatgcacgctctggccgattc
gatgacgcacggcagctgcttgacacaatgcacgaccgggggatcgatcctgacctcgtc
agcttcaatactctaatcaatgccaggtctaagtctgggtgtttggctgctggcgtcgcc
cttgacctcctatttgaagtccgacaatctgggctaaggccagatgttatcacttataac
acgctcatcagtgcttgctcacagagttctaatctggaagatgctgtgacggtgtttgag
gagatgatagcttcagagtgccggccagatttgtggacatacaatgcaatggtgtcggtg
catggccggtgtgggaaggctgaagaggctgagcggctgtttggggagctggtggagaag
ggttttatgcctgacgcggtcacttacaattctcttctctatgcttttgcaaaggaaggg
aatgttgacaaggtggagcacacatgtgaggaattggttaaggctgggttcaagaagaat
gaaataacatacaacaccatgattcatatgtatgggaaaatgggcaggcttgacttagca
gtgggtctgtatgatgagatgagggctgtgggctgtactccagatgctgtgacgtatacg
gtcatgattgattctttggggaagatggataagattgctgaggcagggaaggtactggag
gacatggcagatgcgggattgaagccaactttagtagcttttagtgctctgatttgtgca
tatgccaaaggtgggaggcgggctgacgcggagaagacatttgattgcatgattgcatca
ggtgtcaaacctgatcgtttagcatacttggttatgctggatgtttttgcaaggtcaggt
gagacggaaaaaatgttgcgtctgtatcgaacaatgatgaatgataattataggccagat
gatgacatgtaccaggtcttgcttgttgcacttgcaaaggaagataagtgtgaggagatt
gaagaaattatccaagacatggaattactttgtcaaatgagtctgggagtaatatcaaca
atacttatcaaggcgaggtgtgtttcccagggtggtaaactattaaaaaaggcatgtctc
cagggatacaagcctgatgctaagagcttatggtccattatgaatgcatatgtaatgaca
gaaaagcatgaggaaggtctctctttgcttgaatgcatccgtgaccatgtttccagttcc
caggatttgatatcagaatgttccatcatacttttatgcagaaaacagacgagcatttct
gcctatgaacagtacagtcaaaggttaatgttaaaataccctggtcaaaactgtaacctg
tatgagcacttgattacatgcctcgtggaagctgagttattttctgaagcttgtcaagtg
ttctgcgacatgcagtttattggcatagaagcttctaaaaatatttacgagagtataatt
tccacctactgtaaactgggatttccagaaacagcacatgggttgatggatgatgctttg
caatctggtattccattaaacattctctcgtgtagggtaattataattgaagcatatggg
aatataaaactctggcagcaagcagaaatcttggtgaaagggctgaggcaagcatcaggt
atcgatagaaggatttggaatgctttgatacatgcatatgcagagagtggactttatgag
aaagcaagggcagtctttgataatatgattaaaacaggtcctctgccaactgttgattca
gttaatggaatgatgagggcattgattgttgatggcagattggatgagttgtatgtagtt
gtaggagagcttcaagatatggacttcaagatcagcaaaagtacagtgctccttatgctt
gatgcttttgcaaaagctggggatgtattcgaggtaatgaaaatctataatggaatgaag
gctgcaggatacctgccaaatatgcacctctacagaagtatgacttccttgctctgccat
cacaaccggttcagggatgttgagttgatgattgcagagatggagggagcagggttcaag
ccagatctttctatatttaattctcttcttaatatgtacaccgctgctgggaactttgat
aggacaacacaagtatatcaaagtattctcgaagctggcttagagcctgatgaagataca
tacaatacattgatagtcatgtactgtagaagcttgaggccagaagaaggttttacacta
ttgaatgaaatgggcaaacgaggcctgacaccaaagttgcagtcctacaaaagcttgctt
gctgcatctgcaaaagcagagctgagggagcaagctgaccagctttttgaggaaatgcga
tctaagagttatcaattgaatagatctatctatcatatgatgatgaaaatttacaggaat
gctggcaaccactccaaagctgagaacttgctggcagtaatgaaagaggatggcatagag
ccaacaattgccactatgcatatcctcatgacttcttacgggactgctgggcaacctcac
gaagctgagaatgtactgaacagtttgaaatcttccagtttggaagtcagcacgttacca
tacagtactgtctttgatgcctacctgaaaaacggtgactacgatcttggaataaaaaaa
ctgctggaaatgaaaagagatggtgtagaaccagatcatcaagtttggacatgtttcatt
agggcagctagtttgtgtgagcaaactgctgatgctattcttcttctaaagtctctacag
gattgtggatttgacctccccattaggctcctgactgaaaggacaccatcactgttaagt
gagatcgccaattatctggaagagcttgaagcattagaagattctgctgctttgaacttt
gtaaatgcagtagaagatttgttgtgggcatttgaatgccgagcaacagcttcacggatt
ttccaattggcagtagagagaagcatataccgcgataatgtctttcgtgtggcacaaaag
gactggggcgctgacttccggaagctgtctgctggggctgcacttgttggtcttacattg
tggcttgatcacatgcaagatgcttcactccagggttcaccagaatctcccaaatctgtt
gtactggtcacaggggagggggaatataacatggtatccctgcgtaaaacaatcagagcc
taccttttggaaatgggctccccgttcttaccatgtagagctcggtcaggtcgctttgtg
gtaaaggcctactctcttaagatgtggctgaaagattctcctttctgcatggaccttgag
ttaaaagatgctccagctcttcctaaattaaactcaatgaagctgattgaaggatatttc
atgagagctggtcttgtatcggcatttaaagatatacatgagaaacttggggaagtatgg
ccaaaaaagttttccaggttagctcttttgtcagaagaatgtagggacgaggttatcaag
gctgatataaaaggaaggaaagaaaaactggagagaatgaaaaagaagggtattgttaca
gcaagaaaatctaaaagaagagcacaaagaggaaagtttgttagggaacaggaacaaaac
atgaaagtagtattggattag
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