Sorghum bicolor (sorghum): 8077485
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Entry
8077485 CDS
T01086
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8077485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8077485
Enzymes [BR:
sbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
8077485
Spliceosome [BR:
sbi03041
]
Complex C
Other components
Step II factors
8077485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
SLFN-g3_helicase
HA2_N
AAA_22
AAA_19
Flavi_DEAD
AAA_24
AAA_30
nSTAND3
AAA_16
ABC_tran
T2SSE
DUF3381
AAA_7
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
8077485
NCBI-ProteinID:
XP_002462912
LinkDB
All DBs
Position
2:complement(68676346..68685859)
Genome browser
AA seq
1285 aa
AA seq
DB search
MEGNGNAEVDLDATMTTLGPEDDTSQGLILTNKQRVMYRPPAGKSVLGLDTLADKKRAAG
GGSVFKPPPPNVAVAADSIDEDEKPGPTENDAPSLSTAIRSNSSRRYRGSGSDDKTSLNE
PTVTDDNQRAPTPSHRDETHRQETHISGSSQGSRPHGTPRGSDYYDDRGSRDKYGDRERS
ASIGYSSSGRRRYHDDRESHTRRDERGRSTSIEYTNKRSRHEHSSRSSRTPARSDWDDGR
WEWEDTPRRDYRDNRPGSRRQHPTRSPMLAAASPDARLVSPWLGGSTPRSAASPWDNVSP
SPAPIRASGSSKGSSYSHSSGRSHQLSFSSTTSSNIFDADRSPSNPDRNYEITEEMMQEM
DYNADRAWYDCEEHTTMFDGDNSMYLGDDNSYKKKEAEMPKKLTRRDGSLMTLAQSKKLS
QMTADNAQWEDRQLLRSGAVKGTEVQTEFDDEEERKVILLVHDTKPPFLDGRVVFTKQAE
PVMPLKDPTSDMAIIARKGSSLVREIREKQSMNKSRQRFWELAGSKLGNILGVEKTAEQV
DADTAVVGDQGEINFKEEAKFSQHLKDKAEAVSDFAKSKSLSQQRQYLPIFTVRDDLLQV
VRENQVVVVVGETGSGKTTQLTQYLHEDGYTTTGVVGCTQPRRVAAMSVAKRVSEEMETD
LGDKVGYAIRFEDVTGPNTIIKYMTDGVLLRETLKDADLDKYRVIVMDEAHERSLNTDVL
FGILKKVVARRRDFKLIVTSATLNADKFSKFFGGVPVFHIPGRTFPVNIMFSKTPCEDYV
EAAVKQAMTIHITSGPGDILIFMTGQEEIEATCYALAERMEQLISSSTKTVPKLEILPIY
SQLPADLQAKIFQKAEEGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDA
LQVFPVSRAAADQRAGRAGRTGPGTCYRLFTESAYQNEMLPNPVPEIQRTNLGNVVLLLK
SLRVENLLDFDFMDPPPQENILNSMYQLWVLGALNNVGGLTEIGWKMVEFPLDPTLAKML
LMGEQLECLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYLQWK
SNQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCHMEWDVVRKAICSAYFH
NSARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVTAVDPQ
WLAEMGPMFFSVKETDTSLLDHKKRQKEEKTAMEEEMEKLRQEQAEAARMEKEKEREKRA
KQQQQVAMPGLKKGATYLRPRKMGL
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaacgggaacgcggaggtcgaccttgacgctacgatgaccaccctaggcccg
gaggacgacacgtcgcaggggctaattctgacgaacaagcagcgggtcatgtaccggccg
ccggcggggaagtccgtcctaggtcttgacacccttgctgacaagaaacgggcagcggga
ggcggcagtgtgtttaagccaccccctcccaatgtagctgttgctgctgattccatcgat
gaagatgagaagccaggacctacagagaatgatgcgccaagcctctccacggcgattcgc
agtaactcatcacggcgctatcgaggaagcggttctgatgataaaacatctttgaatgaa
ccaacagtcactgatgacaatcaaagggccccaacacccagccatcgggatgagacccac
cggcaagagacccacatctctggaagctctcaaggttctcgtcctcatggcactcctcgt
ggttctgattactatgatgatagaggatcccgtgataaatatggtgatcgtgagagatct
gcatccattggctatagtagtagtggaaggcgaagataccatgatgatagagaatctcat
actaggcgtgacgagcgtgggaggtctacatcaattgaatatactaacaagagaagccga
catgagcatagctcaagaagctcaagaacacctgcaagatctgattgggatgatggacgc
tgggaatgggaagacacacctcgtcgagattaccgtgataatcgtcctggctccagaaga
cagcatccaacacgatctcctatgctcgctgctgcatcccccgatgcacgcttggtgtct
ccttggttaggcgggagtacaccacgttcagcagcgtccccgtgggataatgtatctcct
tcacctgctccaatacgtgcttctggttcctcaaaagggtcttcttattcacattccagt
ggaagatcgcaccagctttccttttcatcgacaactagttctaatatcttcgatgctgat
agaagtccctcaaatcctgataggaactatgagataactgaggaaatgatgcaagagatg
gactacaatgctgaccgtgcatggtacgactgtgaagaacacaccaccatgtttgacggt
gataattctatgtatcttggagatgataattcctacaaaaagaaggaagcagagatgccg
aagaagctgactcgtagagatggtagcttgatgacccttgctcaaagcaaaaagctgtca
cagatgactgctgataatgctcagtgggaggatagacaattgttgagatctggagccgtt
aaaggaacagaagtgcaaactgaatttgatgatgaggaggaacggaaagtaatacttctt
gttcatgacacaaagcctccgttcctggatgggagagttgtattcacaaaacaagcagaa
cctgtaatgcctctgaaggacccaacatctgatatggctattattgcacgcaaaggttct
agtctggttagggaaatccgtgaaaagcaaagcatgaacaaatcgaggcaacgattttgg
gagcttgctggatccaagcttggaaatatcttgggtgttgagaaaacagctgaacaggtt
gatgcagatactgctgttgttggtgaccaaggtgagattaattttaaagaagaagcaaaa
ttttcacaacatttgaaggataaagcagaagctgtgagtgattttgcaaaatcaaaatcc
ctttctcaacaaagacagtatcttcccatatttactgtacgggatgatctgctacaggtt
gtgcgtgaaaatcaagtagttgtggttgttggtgaaactggttctgggaagactactcaa
ctgactcagtatttgcatgaggatggatatactaccacaggagttgttggctgtacccaa
ccaaggcgtgttgctgccatgagtgttgctaagcgagtcagtgaggaaatggagactgat
ctgggagataaagtcggttatgcaatacggtttgaggatgtcactggtccaaacactata
ataaagtatatgacagatggagtgcttctccgtgaaaccttgaaagatgctgacctcgat
aaatatcgtgttattgtcatggatgaagcacatgaaagatcactgaacactgatgttttg
tttggtatactgaagaaggttgttgcacgtagacgggattttaaactaatcgtcacatct
gcaaccctaaatgcagacaagttctccaagttcttcggaggtgtgcctgttttccatatt
cctggccggacatttccagttaacattatgttcagtaaaacaccatgtgaggactatgtg
gaagcggcagtgaagcaggccatgactatccacataaccagtggccctggtgatatccta
atattcatgactgggcaggaagaaatcgaagctacctgctatgcgcttgctgaacgcatg
gaacagttaatatcatcatccaccaagactgtgcccaagctagagattctgcccatctac
tcacagttgcctgctgacttgcaagccaagatttttcagaaggctgaagagggcgctcgc
aagtgtattgttgctaccaatattgctgagacctcattaacagtcgatggtatcttctat
gtcattgataccgggtatgggaagatgaaggtgtacaacccacggatgggtatggatgcc
cttcaggttttccctgtcagccgggcagctgcagaccagcgtgcaggtagggcaggaaga
actggccctggtacatgttacaggttgttcacagaatcagcctaccagaatgagatgctc
cctaaccctgtgccagagatccaaaggaccaacctggggaatgtggtgcttttactgaaa
tccctcagggttgaaaacttgcttgactttgactttatggacccacccccccaggagaat
atccttaactcaatgtaccaactctgggtgttaggtgcattaaacaatgttggtggcctt
acagaaattggctggaagatggtggagttccccttggatccaactctggcaaaaatgctt
cttatgggggagcaactagagtgccttgatgaggtgctgacaattgtatccatgctatca
gtgccctcagtcttcttccggccaaaagaccgagcagaggagagtgatgcggcaagggag
aagttctttgtcccagagtctgaccacctgacactcctgaatgtatatcttcagtggaag
tctaatcagtatcgaggcgactggtgcaacgaccacttcctccatgtcaagggtctccgc
aaggctcgtgaagtgagatctcagctgctggacatactgaaaaccctgaagatccccctg
acatcatgccatatggaatgggacgtggtgaggaaagccatctgctctgcatacttccac
aactctgcccggttgaagggtgttggggagtacgtcaactgccggaatgggatgccatgc
cacctgcaccccagcagtgcgctatatggcctcggctatactcctgactacgtcgtctac
cacgagcttgtcctgaccaccaaggagtacatgcagtgtgtcaccgcagttgatccgcag
tggctagcagagatgggccccatgttcttctcagtgaaggagacagacacctctcttctg
gaccacaagaagaggcagaaggaagagaagacggcgatggaggaggagatggagaagctg
aggcaggagcaagcagaggccgcgcgcatggagaaggagaaggagcgggagaagagagct
aagcagcagcagcaggttgctatgccaggcctgaagaagggagcgacttatctgaggccc
aggaagatgggtttgtag
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