Sorghum bicolor (sorghum): 8077820
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Entry
8077820 CDS
T01086
Name
(RefSeq) uncharacterized protein LOC8077820
Organism
sbi
Sorghum bicolor (sorghum)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RVT_2
Retrotran_gag_2
rve
gag_pre-integrs
Retrotrans_gag
Motif
Other DBs
NCBI-GeneID:
8077820
NCBI-ProteinID:
XP_002444393
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All DBs
Position
7:56385683..56390248
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AA seq
1442 aa
AA seq
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MGCQDLATHSRAQPSQQRRQPSHGIHSTNLSVGCHRCNLCWADVQADAVAQRLAQEKANA
AAAAAQHAERARQEAHDAALARAVQAEDEAKAATAERDAAAQRASDALARAAKERAAAAV
AIAPESSGASSGGTPVPDLRAAMLHHEAVALLQLHSQAVAVSNIRNHVTTILDVDSGNFS
RWCDQFLLILGKFSLQDHVREDPPDPISPDWARMDCVVKSWIIATLTDDSEIISARGSTA
RHAWLAVESQFLGNREARSIQLETRFRNFVQGDLSITEYCRKLKKMADDLTALGEVISDR
TLVLNVIRGLNKRFSHVGTLLRRAKPFPTFLEAREDLVLEELTMENRKEAPAAALAASTT
TTPAPASSGSGSEGTGGSSKAPNNRRSKRGGGGKGHGNNSSSGQGSRPPGGTTQQQQQHA
TGQQQQTVGGRPWPSFYNPWSGTIQMWPGGPRPPLAPIPVPPHLQAQHQQQQQALAAHQQ
AAPIGAGPWVAPGFYNPMTGLPSWNSTELAAAFSTTSLTPPSSNEWYFDTGATSHMTSQP
SSLSHVLFPRYPNPSSIVVDNGSLIPVTATGSIELSPTLRLNNVLVSPQIIKNLISVCQF
TTDNNCSVEFDPTGCSVKVLPTRKEIVRCNSSGPLYPLCLPPALSFAAQGSSPLWHRHLG
HPGHETVSKLASSVSFPIQDCSDLCHACQLEGHVRLPFPVSTSRASSKFDLIHCDLWTSP
VVSISGYKYYLVILDDCTHYLWTFPLRLKSDTFSELAHFITHASTQFGARVKAVQCDNGR
EFDNSSTRQFFLTQGIHLRMSCPYTSPQNGKAERIIRSINNVVRSLLFQASMPPSYWVEA
LSTATVLLNILPTKTLEFSTPHLALFDKPPTYDHLRVFGCKCYPNTSATASHKLAPRSVQ
CVFLGYSAHHKGYRCLDLSSNRVIISRHVIFDETAFPFAEHHGPSTPADLEFLADDTTDV
VPAPIGPLHKFLPAGTPPSASDTTSAPAGPDVAVPGAPLELPEDADDPPTPALYIPPALR
ASRTPTASRAALRSPTSAPRAATELIGAHNNTSPRLWYVPPALRTGSPSSAPSMGSPAPP
QAPRGPPPRFPPLCPVRDFTCHYSRRPRPPPAAPALAAPTAPAAAAPAAPSPAPTEAAPL
PKGAVPVPPVANQHSMGTRSKNGFRMPAAYHVVPLSPVPKTFRSALADPNWRAAMEEHSA
FLQNHTWDLVPRPPRANVVTGKWIFKHKLQSDGSLEQYKARWVLRGFIQRPGVDFDETFS
PVVKSATIRKVLSLALSRRWPIHQLDVKNAFLHGNLSETVYCQQPSGFEDPAHPDFVCLL
KKSLYGLKQAPRAWYSQMASYLLSIGFVEAKSDTSLFVYQRGLDTAYMLLYVDDIVLTAS
STDLLWPIISALQREFAMKDLGELHHFLGSGGRTGGLGGAAAPLVGRNRWEQSARAGPKI
GD
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atggggtgccaggacctcgcgacgcactcccgcgcgcagccttcccaacagcgtcgccag
cccagccatggcatccactccaccaacctctcagtcggatgccaccgatgcaacctctgc
tgggctgacgtccaggctgatgcagttgcccagcgcctcgcccaggagaaggccaacgcg
gctgccgccgctgctcagcatgccgagcgcgcacgccaggaggctcacgatgctgctctg
gcacgcgccgtccaggccgaagacgaagccaaggctgcaaccgcggagcgtgatgccgct
gcacagcgcgccagcgatgccctggcacgggctgccaaggagcgcgcggctgctgctgtc
gccatcgcgccggagtcttctggtgcgtcatctggaggtacgccggtgcctgatctgcgc
gcagccatgcttcaccacgaagctgtggctctcctccaactccactctcaggccgttgcc
gtcagcaacatccggaaccacgtcaccaccatcctcgacgtcgattctggtaatttcagc
cgttggtgcgatcaatttctcctcatcctcggcaagttttcgcttcaggaccatgtccgc
gaggatcccccggacccaatctctcctgattgggcccggatggactgcgtcgtcaagtcc
tggatcatcgccacgctcaccgacgatagcgagatcatctccgcccggggctccactgcc
cgacacgcctggctcgccgtcgagtcgcagttcctcggcaatcgggaggcccgctccatt
cagttggagacgcggtttcgcaacttcgtccaaggcgacctctccatcaccgagtactgc
cgcaagctgaagaagatggccgatgatctcacggccctcggcgaggtcatctccgaccgc
accctcgtcctcaacgtcatccgcggcctcaacaagcgcttcagccacgtcgggacgctc
cttcgccgggccaaacctttccccaccttcctggaggcgcgtgaggatctcgtcctcgag
gaactcaccatggagaaccgcaaggaagctccagctgctgcactcgccgcctccaccacc
accaccccggcccctgcgtcctctggttcgggctccgagggcactggtgggagctccaag
gctcccaacaaccgtcgcagcaagcgcggcggtggcggcaaaggccacggcaacaacagc
tcttcaggacagggctccagacctcctggtggcacaacgcagcagcagcagcagcatgcc
actggacagcagcagcagactgtcggagggcgcccttggcccagcttctacaatccttgg
tccggcaccatccagatgtggccagggggccctcgtccacctctggcgcccatcccggtg
ccccctcacctccaggcgcagcaccagcagcagcagcaggcgcttgctgcccaccagcag
gctgctcccattggtgctggaccatgggtcgctccggggttttacaaccctatgaccggc
ctcccctcctggaactcgacagagctcgccgcggcattcagcacgacctcactgacccct
ccttcgagcaacgagtggtacttcgacacaggtgctacttcacatatgacatctcagcct
tcttcactttcacatgttctattcccgcggtaccctaacccttcatctattgttgttgat
aatggctcacttattcctgttactgccactggctccatagagttatcacctactttacgt
cttaataatgtccttgtgtcaccacaaattattaagaatcttatctctgtttgccaattt
actaccgataataattgctctgttgagtttgaccccactggttgttctgtgaaggttctt
ccaactcgaaaagagatcgtcaggtgtaatagctccgggccgctataccctctttgcctt
ccaccagcactctccttcgccgctcagggctcctctccactgtggcatcggcatcttggg
caccccggtcatgagaccgtctcaaagctcgcgtctagtgtttcatttcctattcaggac
tgttcagatttatgtcatgcttgtcaactagagggccatgttcgtttgccctttcctgtg
tccacctctcgtgcatctagcaagtttgatctcattcattgtgatttatggacatctccg
gttgttagcatttcaggttataaatactatttggtcatacttgatgattgcactcattat
ttgtggacctttccattaagacttaaatctgacactttcagcgagcttgctcacttcatc
acccatgcctccactcaatttggcgcccgcgtcaaagctgtccagtgcgacaatgggaga
gagttcgacaactccagcacccggcaattctttctcacccagggcattcaccttcgcatg
tcctgcccttacacctcgcctcaaaatggtaaagctgaacgcattattcgctctatcaat
aatgttgttcgctccctgctctttcaggcatccatgcctccctcctactgggtggaggcc
ctttccacggcgactgttcttctcaacatattgcccaccaagactctagagttctccacg
cctcaccttgccctgttcgacaagccacccacatatgatcatctacgagtcttcggttgc
aaatgttatcccaacacgtctgccactgcttctcataaacttgcccccaggtctgtccaa
tgtgtttttctaggctattccgctcaccacaaagggtaccgctgccttgacctatcatct
aatagagtcatcatctcccgacacgtcatctttgatgaaacggctttcccttttgctgag
caccatggtcctagtactcctgcagacctcgagttccttgctgatgacactactgatgtc
gtgcccgctcctattggaccgttgcacaagtttttgcctgcaggaactccacctagtgcc
tccgacaccaccagcgcccctgccggtcctgatgtggccgtgcctggggcgcccctagag
cttccagaagatgctgatgatcctccgacgcccgcgctctacatcccccctgcgctgcga
gcatcgaggactccaaccgcgtcacgcgcggctctcaggagccccacttccgcgccacgc
gcggccacggagctaattggcgcacacaacaacacctctccacgcctgtggtacgtcccg
cccgcgttgcgcactggctcgccatcctccgcgccatccatgggctcccccgcgcctcct
caggcgcctcgcgggcctccaccgaggtttccacctctttgcccggttcgcgacttcaca
tgccactactcgcgtcgaccgcgaccaccaccggctgctcctgcactggccgccccgact
gctcctgcagcagccgcccccgctgctccttcaccggctcctacggaagccgccccgctg
cccaagggcgcggttcctgttccaccggtggccaaccagcactccatgggcacccgttcg
aagaacggcttccggatgcccgccgcctaccatgttgtgcctctctctccggtgccaaag
accttccgaagcgctcttgctgaccccaattggcgagcagctatggaagaacacagtgct
ttcctccagaaccacacctgggatcttgtgccccgtccgcctcgggccaatgttgtcact
gggaagtggatcttcaagcacaaacttcagtctgatggctccctcgagcagtacaaggca
cgttgggtcctccgtggtttcatccagcgacctggtgtggactttgatgagaccttcagt
ccggtggtgaagtccgctactatccgcaaagtgctctccttggcgctctctcgtcgttgg
cctattcatcaacttgatgtgaagaacgcctttcttcatggcaatctcagtgagacggtg
tattgccagcagccgtccggattcgaagatccagctcatccggatttcgtctgcctcttg
aagaaatcgctctatggcctgaagcaggctcctcgtgcttggtatagccagatggccagt
tacttgctgtctattgggtttgttgaagccaagtcagacacctcgctcttcgtctaccag
cgtggattggacacagcctatatgttgctctatgttgatgacattgtcctcacagcttca
tcgaccgatcttctctggccgatcatctcagcactgcagcgagaattcgccatgaaagac
cttggtgaactacatcacttcctcggcagtggcggacggacgggggggctggggggggct
gcagcccccctcgtgggccgaaaccgctgggagcagagcgccagagccggcccaaaaatt
ggtgactaa
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