Sorghum bicolor (sorghum): 8080187
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Entry
8080187 CDS
T01086
Name
(RefSeq) mRNA-decapping enzyme-like protein
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8080187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8080187
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
8080187
mRNA degradation factors
5'-3' decay
Decapping complex
8080187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
Motif
Other DBs
NCBI-GeneID:
8080187
NCBI-ProteinID:
XP_002463564
UniProt:
C5WTX4
A0A921RWV6
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Position
1:1788541..1792833
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AA seq
393 aa
AA seq
DB search
MARSRRGGFGGGGGNVKVTPNLAWDREGTRMLNLSVLRRLDPGVADILITAAHVVAYSFD
EGQGEWTRKPVEGSLFVVKRNTQPRFQFIIMNRINTENLVEDLLTSFEVEVQSPYLMYRN
AADEIIGIWFYDPQECQEVAHLFSRIAYAYSRASPKTNLSSKSVFEEPEAASGPYALPVV
EDTLQQPPTTDDDDVEEFFLTPSKAATCVHTIGGTGAVQPNQSFRAIPSPGHGSHNSTAA
HSSSLHSLLPSRTSSVTLRAFDVHRPNSSTTIQPTSLLDSKPPLLAPMATTQSTVAKAAS
SLPTVPPLHPPFADQQPKSAPLLHPFSLPPVPPVPPYGMPLLQPFPPPNPLPLLTPASYS
QVVTREQVGAALLRLAQNDNFIDMVYREMAKRP
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggagcaggcgcggcggcttcggcggcggcggcggcaacgtgaaggtgacgccg
aacctggcgtgggaccgggaggggacgcggatgctcaacctcagcgtgctgcggcgactc
gaccccggcgtcgccgacatcctcatcaccgccgcgcacgtcgtcgcgtacagcttcgac
gagggccagggggagtggacccggaagcctgtggaggggtcgctcttcgtcgtcaagagg
aacacccagcccagattccaatttatcatcatgaatcgtataaacacagaaaatctagtc
gaagatctcttgacgagttttgaggttgaggtgcaaagcccctacttgatgtaccgtaat
gctgctgatgaaatcattggaatttggttctatgatccacaggaatgtcaagaagttgca
catctttttagcaggatagcatatgcatattcaagggcgtcacccaagacaaatctttct
tccaaaagtgtatttgaagaaccagaagcagcatctgggccatatgctctacctgtagtt
gaagatactctacaacagccacctaccacggatgatgacgatgttgaagagttcttccta
accccttcgaaggcggccacatgtgtacatacaattggtggaacaggcgcagtacaacca
aaccaatctttcagggctatcccttctccaggtcatggatcacataattctactgcagca
cactcttcttccctgcacagtctgcttccttcacgaacttcatcagttactctgagggcc
tttgatgttcatagacccaatagctctaccaccattcagcctacaagtcttttagattca
aaaccaccactacttgcaccgatggctactacgcagtcaacagtagctaaagctgcttcg
tcactgcctactgttcctccacttcatcctccctttgctgatcagcaaccaaaaagtgct
cccttgctccaccccttttcactaccccctgtgccccctgttccaccatatggcatgccc
ttgcttcaaccattcccacctcctaatccgctgccattgcttaccccagcatcttatagc
caggtggtaacaagagagcaagtaggcgctgcactgctgaggcttgcacagaatgataat
ttcatcgacatggtttaccgggagatggctaagagaccgtaa
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