Sorghum bicolor (sorghum): 8082888
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Entry
8082888 CDS
T01086
Name
(RefSeq) SWI/SNF complex subunit SWI3B
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
8082888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8082888
03036 Chromosome and associated proteins [BR:
sbi03036
]
8082888
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
8082888
Chromosome and associated proteins [BR:
sbi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
8082888
PBAF complex
8082888
GBAF(ncBAF) complex
8082888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_1
Motif
Other DBs
NCBI-GeneID:
8082888
NCBI-ProteinID:
XP_002451710
UniProt:
C5XXF4
A0A921UHF7
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All DBs
Position
4:6396570..6400853
Genome browser
AA seq
498 aa
AA seq
DB search
MATTATTTATVTAPAATANFVPTPTPPHPRPAAPPALRAPSTLGPVKSEAPPTPSSSTAT
TAAAAAAVAEDPSYIITVPSYSAWFSFDSIHDTERRLLPEFFEGEAAAASGCRGPHAYKY
YRDSLIRRFRARPGRRLTLTEARRGLVGDVGSVRRVFDFLEEWGLINYGALPSGSKQAKE
KREEAAQQSTLPSGATVPRKLCTGCRTVCGLAYFACDKADISLCTRCYVNNNYRPGLSPA
NFKRVEITEDSKADWTDKETLHLLEAVLHYGEDWKKVSEHVGSRSEKDCIARFIRLPFGE
QFMGPREDRMGFENNDDNTDEPGADVSKRLHLTPLADASNPIMAQVAFLSAIVGPDVASA
AAQAAISAQSRVDLNDSEIETSINSTKEEESSHTNGLSVNDLLKEAAANARAQLEKERNS
IEQSLSNIVDVQMMEIQDKICRFEQKEMLMEKERQQLNCLRDILFTDQLAVMQHQQRTPA
VVTECKGDEKPKPLANMS
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggccacaacggcgacaacgacggcgacggtgacggcgccggcggccacagccaacttc
gtacctacaccaacgcctccgcatccacgccccgccgcgccacctgctctccgggcgcct
tccaccttgggtcctgtcaagtcagaggcccctcccaccccctcgtcctctaccgccacc
accgccgcggccgcagccgccgtagcggaggatccatcctacatcatcaccgtccctagt
tattcagcgtggttctcgttcgactccatccacgacacggagcgccgcctcctgccggag
ttcttcgagggagaggccgcggcggcgtccgggtgccggggcccgcacgcgtacaagtat
taccgcgactccctgatacggaggttccgggcgcggccgggtcgacggctcacactcacg
gaagccaggagggggcttgttggtgacgtcggctcagtccgccgcgtcttcgacttcctt
gaggaatgggggctcatcaactacggtgctttgccatcggggtcaaagcaagcgaaagag
aagagggaagaggctgcgcaacagtcaacgttgccttctggggcaactgtacccaggaag
ctctgtactggatgccgcaccgtgtgtgggcttgcttacttcgcctgcgacaaggcagat
ataagtctttgtactagatgctatgtaaataataactaccggccgggtctgtctcctgct
aacttcaagagagttgaaattactgaagattcaaaagcagattggacagacaaagaaact
cttcacttgcttgaggctgtcttgcattatggcgaagactggaaaaaggtgtctgaacat
gttggtagtcggtcagaaaaagactgtattgcaagatttatacggttacctttcggagaa
cagttcatgggacccagggaggatagaatgggatttgagaacaatgatgacaatactgat
gagcctggagcagatgtctcaaaacgactacatctcactccactagcagatgcaagcaat
ccgattatggctcaggttgcatttttatcagctattgtgggtcccgatgttgcctcagct
gcagcgcaagcagctatttctgcacaatcccgtgttgacctaaatgacagcgagattgaa
acttcaataaatagcaccaaggaagaagaatcatctcacacaaatgggctctcagtcaac
gatttactgaaagaggcggctgctaatgcacgggcacaacttgagaaggaacgaaacagc
atagagcaatctttatcaaacatagtagatgtccagatgatggaaatccaagataaaata
tgccggtttgaacagaaggagatgctgatggagaaagagcgacagcagctgaattgtcta
agggatatacttttcacagatcaattggcagttatgcaacatcaacaaaggactccagct
gtagtcacagagtgcaaaggtgatgagaagccaaagcccctggcaaacatgagttga
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