Sorghum bicolor (sorghum): 8083208
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Entry
8083208 CDS
T01086
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
8083208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sbi03021
]
8083208
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8083208
Transcription machinery [BR:
sbi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
8083208
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
8083208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_3
TFIIA
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
8083208
NCBI-ProteinID:
XP_002437445
UniProt:
A0A921Q7M0
C5Z7U3
LinkDB
All DBs
Position
10:57165965..57172247
Genome browser
AA seq
645 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDSVPAAGGGGPVPSSTDPGAGGGGGGDGPGMHGRGRGRGSYRQT
VCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNMYK
MGFCPNGPNCRYKHIKLPGPPPSVEEVLQKILQMRSFNRYGQNRNNNYNQQGERPQHPQG
SGMPNQNSAENATAAAPPAGGQQAQTMNQQPPQQQQKPNTNDQAQGVSNGQQATRIATPL
PQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESTENVILIFSINRTRNFQ
GCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSMQWLKLCELSFQKTHHLRNPYNDNLPVK
ISRDCQELEPFIGEQLASLLYLEPDSELTAMLIAAEAKREEEKAKGVSADEAADNQDIVL
FDDNEEDEEEESEEEEEANGQESQGRGRGRGMMWPPQMPMMRGPMMAGRGFPPNMMGDGF
GFGGGFGMPDPFGMPRGFPPFVGPRFPGDFARGPMPGMGFPGRPPQPFPLGLDMMMGPGR
GPLMGGMGMGGPGRPNRPMGMAPFMPPPPPNNRAAKREQRRPGGDRGDRFETVSSDQGNR
GHDNTGNSGADGARAQSGDRYGRSALRDDDSESEEEAAPRRSRKR
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacggcggactgagcttcgacttcgagggcggcctcgactccgtcccg
gcggccggtggcgggggccccgtgccgtcctccaccgaccctggcgcgggcggaggcgga
ggcggcgatgggccgggtatgcacgggcgcggccgaggtcgcgggagctaccgccagacg
gtgtgccggcactggcttcggggcctctgcatgaagggcgaggcgtgcgggttcctgcac
cagttcgacaaggcccgcatgcccgtatgccgcttcttccgcgacttcggcgagtgccgc
gagcccgactgcgcgtacaagcactcgtacgacgacgtcaaggagtgcaacatgtacaag
atgggtttttgtcccaatggtcctaattgccggtacaagcatatcaagctacctgggcca
ccaccttctgttgaggaagttcttcagaagattttgcagatgcgttctttcaacagatac
ggtcagaatagaaataataattataatcagcagggggagagacctcagcatccacagggt
tctgggatgcctaaccaaaattcggcagaaaatgctactgctgcggctccaccagctggt
ggacaacaagcacaaacgatgaatcaacagccaccacagcagcagcagaagccaaataca
aatgaccaggcccaaggtgtttcaaatggtcaacaggccactagaatcgccacaccgctt
ccacaaggaccatctaggtacttcattgttaaaagttgcaatcgggagaatctggaaata
tcagttcagcaaggaatttgggccacgcagaggagtaacgaggctaaactcaatgaagct
tttgaatccaccgagaatgttattttgatattctcaattaatagaactcgcaatttccag
ggttgtgcaaagatgacttctaggatcggtggctacattggtggtggaaactggaaatct
gctcatggaacagcgcattatggtcggaatttctctatgcagtggcttaagctttgtgag
ttgtcatttcagaaaacccatcatctccgcaatccatacaatgataacctccctgttaag
atcagcagagattgccaggaactagaacctttcattggtgagcagttggcttctctgctt
tatctggagccagacagcgaacttacggctatgctaattgcagcagaggccaagcgagag
gaggaaaaagcaaagggtgtcagtgctgacgaggcagctgataatcaagatattgtgctg
tttgacgacaatgaagaggatgaggaagaggaaagcgaggaggaagaagaagccaatggc
caagagtctcaagggaggggaagaggaagggggatgatgtggcctcctcaaatgccgatg
atgcgtgggccaatgatggcagggcgtggcttccctcccaacatgatgggtgatggcttt
ggtttcggcggcggtttcggcatgcctgatccttttggcatgccacgtggcttcccacca
tttgttggcccaaggttccccggggactttgctagaggcccgatgcctgggatgggcttc
cctggtaggcctccgcagcctttccctctaggtcttgacatgatgatgggccctggccgt
ggtccactgatgggaggcatgggaatgggcgggcctggacggcctaatcgccccatgggt
atggcgcccttcatgcccccgccacctccaaataaccgtgctgcgaagcgggagcagaga
aggccagggggtgaccgtggcgacaggttcgaaacagtgtcatcagaccagggcaacagg
ggccatgataacactggaaactctggggcagatggagccagagcccagtctggagacagg
tatggtagaagcgcccttcgggatgatgacagtgagagtgaagaggaggcggctcccagg
cgatcaagaaaacgatag
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