Sorghum bicolor (sorghum): 8085890
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Entry
8085890 CDS
T01086
Name
(RefSeq) DNA mismatch repair protein MSH3
KO
K08736
DNA mismatch repair protein MSH3
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
8085890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbi03400
]
8085890
DNA repair and recombination proteins [BR:
sbi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
8085890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
GP38
Motif
Other DBs
NCBI-GeneID:
8085890
NCBI-ProteinID:
XP_002448795
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All DBs
Position
6:complement(60362981..60370825)
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AA seq
1100 aa
AA seq
DB search
MGKPKQQVLSRFFSPKPGPAPAAADPPPPPPPPPNPKPSAAHPPISTVASFSPAKRARAL
SLSPKPPAAKRPNPTPPPSRDAVRRRLLEPLDPPPPRSLKPTAPGGGGKGYTPLEQQVVD
LKARHPDVLLMVEVGYRFRFFGEDAAVAAAVLGIVAHPDRSFLTASIPTFRLGFHVRRLV
AAGHKVGVVRQTETAAIKAAAGGAGGAPFARGLSAVYTRATIEAAAGELEGGGAATPEEG
SSYLVCVVDKEVEAAGREGLQVKVGMVAIEVSTGEVIHGEFLDSDSRSGLEAVLLGLAPV
EVILGTPLSFATDKIMKAYLGPTSNVRVERVSCECFGEGGALAELITLFEKSLDNASRAE
DDRKLIQTNDDNNNLHGIEGIMAMPELVVQALALSVRYLKGFGMERIICFGSSFRPFSAG
TEFSLSANALQQLEVFRNNSDGATEGSLFQTMNNTCTSFGSRLFRNWLTHPLCDRHLICA
RHDAVSEIFESMGSQHSVNNLQDGGDRSCTASARSDLCTVLSSVLALLGRSLDIQRGITR
VFHCKATAKEFVGVIQSILTVGKQLQKLVLEDIGTVSSQHKPVHSSLLRRLISTASSPTV
LNSAVKLLSCLNKDAADQGDMLNLFIASVDQFPEVTEGHVNVKMADHKLDLLIVEYRKQL
GMRNLEFKTVAGTTHLIELPVDRRVPSNWIKINSTKKAIRYHTPEILKNLDNLLLAKEEL
AVICRSMWHKFLTDFGEYYAQFQAVVESLAALDCLYSFAVLAKQNNYIRPIFVHDNEPSQ
IHIKDGRHPVLESLLGNNFVPNDTELHTDGEYCQIVTGPNMGGKSCYIRQVALITMMAQV
GSFVPASSAMLHVVDGIYTRMGASDSIQQGTSTFHEEMNEASNILRNCSARSLVIIDELG
RGTSTHDGVAIAYATLHYLLKEKKCIVIFVTHYPKILDIQREFEGSVGAYHVSYLATMKL
LEVTDKPVETSPEANNLGEIIFLYKLVAGASDRSFGLNVALLAQLPSRCIKRASVMAAKL
QEELSAREENKLRRTTDAPTVDGPSESSAEVGLLCSQPYQQLAETCRKILLNITLAQSNN
DVVDTLPSLKNAQEIARKMI
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagcccaagcagcaagtgctttcccgcttcttctccccgaagcccgggcccgcg
cccgccgccgccgacccgccgccgccacctccccctccccctaacccgaaaccctccgcg
gcgcatccgcccatctccaccgtcgcctccttctccccagccaagcgcgcgcgcgccctc
tccctctccccaaaaccccccgccgccaaacggcccaatcccacccctcctccttcccgt
gacgccgtccgccgcaggctcctggagccgctcgacccgccgccgcctcgctccctgaaa
cctactgcccccggcggcggtggcaagggctacaccccgctggagcagcaggtggtcgac
ctcaaggcccgccaccccgacgtgctcctcatggtcgaggtgggctaccgcttccgcttc
ttcggcgaggacgctgccgtcgccgccgcggtgctcggcatcgtcgcgcacccggaccgc
agcttcctcaccgccagcatccccaccttccgcctcggcttccacgtccgccgcctcgtc
gccgcgggccacaaggtcggggtcgtgcgccagactgagaccgccgccatcaaggccgcg
gccgggggcgcgggaggcgccccgtttgcgcggggattgtccgcggtgtacacgcgcgcc
acgatagaggccgcggcaggcgagctggagggtggcggcgccgccacgcccgaggagggg
agcagctacctcgtctgcgtcgtggataaggaggtggaggcggcggggagggaggggctt
caagtgaaggttgggatggtcgcgatcgaggtgtccacgggtgaggtcatccacggggag
ttcctggacagcgactccaggagcggactcgaagctgtgctgcttggattggcgcctgtg
gaggtcatcctcgggacaccactctcttttgccacagataagattatgaaggcatatttg
ggacccacctctaatgtgcgggttgagcgtgtatcatgtgaatgttttggcgagggtggt
gctttagctgaactgataactttatttgaaaagtctttggacaatgcttctagggctgaa
gatgatagaaagctgatacaaacaaatgatgacaacaacaatcttcatgggattgagggt
atcatggcgatgccagagctagttgttcaagcattagcattatcagttcggtatctcaaa
ggtttcggcatggaaaggataatatgctttggttcttcattccggccattttctgctggt
acagaattttccttatcagcaaacgctcttcaacaacttgaggtgttcagaaacaactca
gatggtgcaacagaagggtctctgttccaaactatgaacaatacatgcacatcttttggg
tctagactgtttagaaactggttaacgcatcccttatgcgatagacatctgatttgtgct
cgtcatgatgcggtatctgagatttttgaatcaatgggatcacagcattcagttaacaat
cttcaggatggaggggatagatcctgcacagcttcagcacgtagtgatttgtgtactgtc
ctttcgtcagttttggcattgcttggaagatcacttgacattcaaagaggaataacaagg
gtttttcattgcaaagccacagctaaagagtttgttggtgttatccagtctatcctcaca
gttgggaagcagctgcagaagcttgttcttgaagatattggcactgtctcttctcagcat
aaacctgtgcactcctctttactgagaaggctaataagtacagcttcgtcacccactgta
cttaatagtgctgtgaaacttctgtcttgtcttaacaaagatgcagctgatcaaggagat
atgctgaacctattcattgcatctgtggatcagttcccagaggttacagaaggtcatgta
aatgtaaaaatggctgatcataaacttgatttattgatcgtggagtaccgaaagcaactt
ggtatgcgcaacttggagtttaaaaccgtagctggaaccacccatttgatcgaactacca
gtagatagaagggtaccatcaaattggataaagataaatagcacaaaaaaggccatcaga
taccatacccctgaaatactgaagaacctagacaatctattactggctaaggaggagcta
gctgttatatgcaggtctatgtggcataaattcctcacagattttggcgagtactatgca
cagtttcaagcagttgttgaatctcttgcagctctggactgcctctactcatttgcagtt
cttgcaaagcagaataattatatacggcctatttttgtccatgataatgaaccaagtcag
attcacatcaaagatggacgccatccggttctggagtctttgctgggaaacaattttgtt
ccaaatgacacagagcttcacacagatggtgagtactgccagattgtcacaggaccaaac
atgggaggaaagagttgctacattcgccaagttgcactaattaccatgatggcccaggtt
ggttcctttgtaccagcttcatcagctatgttgcatgttgttgatggaatttatacccga
atgggtgcatctgacagtattcaacaaggaacaagtaccttccatgaagagatgaatgaa
gcttcaaacatattgcgtaactgctcagctcgatccctagttatcattgatgagcttggt
cgaggcacaagcacacacgatggcgttgctattgcttacgctactttacactatcttctc
aaagagaaaaaatgcattgtcatttttgtcactcattatccaaagatccttgatattcag
agagaatttgaaggttctgttggggcatatcatgtttcgtatctagccacaatgaagctt
ttggaagttactgataaaccggtggaaactagcccagaggcaaataatcttggagaaatt
attttcttgtacaaacttgttgctggagcttcagatagaagctttggtcttaatgttgcc
ctgcttgcacagcttccgtctagatgtataaagagggcatcagtcatggcagccaaacta
caagaagagttaagtgcgcgtgaggaaaataagcttcggaggacaacggatgcaccaacc
gtggacggaccatctgaaagttctgcagaagttggtttgctttgttcacagccttaccaa
caattggcagaaacatgtcgcaagatactactgaacatcacgttggctcaaagcaataat
gatgtagtggacacacttccatctttgaagaatgcacaggaaattgcacggaagatgata
taa
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