Syngnathoides biaculeatus (alligator pipefish): 133492297
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Entry
133492297 CDS
T09681
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
133492297 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133492297 (lig3)
Enzymes [BR:
sbia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
133492297 (lig3)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
133492297 (lig3)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
BRCT_2
Motif
Other DBs
NCBI-GeneID:
133492297
NCBI-ProteinID:
XP_061660399
LinkDB
All DBs
Position
18:11605670..11617837
Genome browser
AA seq
1000 aa
AA seq
DB search
MQRCVILLIKNTVALRPLAPRLLRACATSSRLSPPPPESRRRLLSPADHHGALPLAAFCR
LFPHPPDAMAEQRFLVEYAKRGTAGCKKCKDKIAKGIVRIGKVVPNPFSESAGEMKEWYH
VKCMFEKLERARATTKKIEDITDLEGWEELQDEDKELINQHVSDLMAKVNSSPKKKVQAK
LNTSGKLMSPPAADSSLNAPRKFSGFTAAKAGASSSAPLPSPTKPNQGSALATQLCDPNH
KDCLFREFRKLCATVAENNSYNSKTQIIEKFLRKGTGGDRFHGNLYLTVKLLLPGVVKSV
YNLNDKQIVKLFSRVFRCNQDDMVRDLEKGDVSETVRMFFEESKAFPPSPKSLLTIQEVD
ASLTRLAQLTKEDEQQAELEEIAKKCTSNDLKGIIRLIKHDLKMSAGAKHVLDAVDPNAY
DAFKASRNLGDVIERVLRNQQESSNGSGPRKLLTVEASLMTPVQPMLAEACKSIEYAMKK
CPNGMYSEIKYDGERVQVHKSGDSFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILD
AEVLLIDTNTSKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNGNSLMERPLCERRKFLH
DNMVEVPNRILFSEMKHVTRAGDLADMITRVIREGLEGLVLKDVKGSYEPGKRHWLKVKK
DYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPDSKKWCTVTKCSGGYDDAML
ARLQKELDVIKISKDPSKIPVWLKIVKNYYPDFLIRSPEQAPVWEITGAEFSKSEMHTAD
GISIRFPRMTRIRDDKDWKSATNLHQLKELYRISKENCDFKVTAGPSGEDQGSSGGDSDG
NSPALGTSSREKALLKKTGNSHLAKRKVVKSEPSSPALEAPASKKVRKSENGEQSNGHAK
KPKVAAPPPPQMLLSQNDKTLLDIFSGVKLFLPSGVDDFAKLRRYFVAYDGDLVADYDAT
SATHTLAGDGEEEGGAGRAQRVSPNWIWECIRKRRVVPPC
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atgcagaggtgtgtgattctgctaatcaagaataccgtcgcccttcgccccctggccccc
cggctcctccgagcgtgcgcgacctcttcacgcctctcacctccgcctcccgaatcccgc
cgccgtcttctctcgccagccgaccatcacggagccctccccctcgccgcgttctgccgt
ctcttcccgcacccgcccgacgccatggcagagcagcgcttcctggtggagtacgccaag
cgcggcacggccggctgcaagaagtgcaaggacaagatcgccaaggggattgtgcgcatc
ggcaaggtggtgcccaacccgttcagcgagtcggccggcgagatgaaggagtggtaccac
gtcaagtgcatgttcgagaaactggagcgcgcccgcgccaccaccaagaagatcgaggac
atcactgacctggagggctgggaggagctgcaggacgaggacaaggagctcatcaatcaa
catgtctcagacctgatggccaaagtgaattcgagtcccaagaagaaggtgcaggccaag
ttgaacacgtcgggcaagctgatgtctcctcccgccgccgactcttccttgaacgcaccg
cgcaagttctcaggcttcaccgctgccaaggcaggcgcctcgtcgtctgcacccttgccc
tcgcccaccaaacctaaccagggcagcgctctggccacccaactatgcgacccgaaccac
aaggactgcctgttccgagagttccgcaaattgtgcgccacggtggccgagaacaacagc
tacaacagcaagacgcagatcatcgagaagttcctgcgcaagggcaccggcggagaccgg
ttccacggcaacttgtacctgacggtgaagctgctgctgcccggcgtggtgaagagcgtt
tacaacctcaacgacaagcagatcgtcaaactcttcagccgcgtcttccggtgtaaccag
gacgacatggtgcgagatctggagaagggcgacgtgtccgagacggttcgcatgttcttc
gaagagagcaaagccttccccccgtcgcccaagagcctgctgaccatccaggaggtggac
gcctcgctcacccgtctcgcgcagctcactaaagaggacgagcagcaggccgagctggag
gaaattgccaaaaagtgcaccagcaacgacctaaaaggcatcatccggctcatcaagcac
gacctgaagatgagcgccggagccaagcatgtactggacgctgtggatccaaacgcctac
gacgccttcaaggcctcccggaacttgggcgacgtgatcgagcgcgtgctgaggaaccag
caggagtcgtccaacgggtcgggcccgaggaagctgctcactgtggaggcctcgctcatg
acaccggttcagcccatgctggcggaggcgtgcaaatccattgagtacgccatgaagaag
tgccccaatggcatgtactctgagatcaagtacgacggcgagcgtgtgcaggtgcacaaa
agtggggacagcttcagctacttcagccgtagcctcaaaccggtgttgcctcacaaagtg
gcccacttcaaggactacatcccgcaggcgttccccggcggccacagtatgattttggac
gccgaggtgctgcttatcgacacaaacaccagcaagccgctccccttcgggacgctgggt
gtgcacaagaaagccgcctttcaagacgccaacgtgtgcctctttgtcttcgattgcata
tacttcaatggcaacagtctcatggagaggccgctgtgcgagcgccggaagttcttgcac
gacaacatggtggaggtgcccaaccggatcctgttttccgagatgaagcacgtcacgcgt
gcaggagacctggccgacatgatcactcgagtcatcagggaaggtttggaaggcctggtg
ctcaaagatgtgaagggctcgtacgaaccgggcaagcgtcactggctgaaggtgaagaaa
gactacctgaacgaaggtgccatggccgacacggcagacctggtggtgctgggcgccttc
tacgggaaaggctcaaacggcggcatcatgtccagcttcctgatgggctgctacgacccg
gactccaagaagtggtgcacggtcaccaagtgctcgggaggctacgatgacgccatgctg
gctcggctccagaaggaactggacgttatcaaaattagcaaggaccccagcaaaattccc
gtctggctgaaaatcgtcaagaactactacccggatttcctcatccgtagccccgagcaa
gcgcccgtgtgggagatcacaggtgccgagttctccaagtcagagatgcacacggccgat
ggaatctccatccgcttcccgcgcatgacgcgcattcgtgacgacaaggactggaagagc
gccaccaacctgcaccaacttaaagagctgtatcgcatctccaaggaaaattgtgatttc
aaagtgacggcgggaccctccggcgaagaccagggttcgtcgggaggggacagcgacgga
aactcgcccgctctgggcacgtcgtcgcgtgaaaaagccttgctcaagaagacgggcaac
agtcacctagccaaacgcaaggtggtgaaatctgagccgagctcccccgctctggaggcc
cccgcctccaagaaggtgcggaagagtgaaaatggagagcagagcaacggacacgccaag
aagccaaaggtggcagctcctccccctccgcaaatgctgctgtcccaaaatgacaagaca
ctgctagacatcttcagcggtgtcaagctgttcctaccgtcgggcgtggatgactttgcc
aagctgcggcgttacttcgtggcatacgacggcgatctcgtcgccgactacgacgccacc
tcggccacccacacgctggcgggcgacggggaggaagagggcggcgccggccgggcccag
cgggtgtcgcccaactggatctgggagtgcattcgcaagaggcgggtggtgcctccctgc
tag
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integrated database retrieval system
