KEGG   Syngnathoides biaculeatus (alligator pipefish): 133510397
Entry
133510397         CDS       T09681                                 
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
sbia  Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sbia00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    133510397
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sbia00536]
    133510397
Glycosaminoglycan binding proteins [BR:sbia00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   133510397
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 133510397
NCBI-ProteinID: XP_061694222
LinkDB
Position
13:7050528..7312505
AA seq 1803 aa
METQRRPARWRTKRWLRESTLAAVVVLILQTIAVRAAEPVDVLKALDFKSSPEGVKKTPG
FCTMRRGSKPDIAYRVSKNAQISAPTKQLFPGGVFPEDFSIMFTVKPKSGLQSFLLSVYN
KQGIQQLGVEVGRSPIFLYEDQHGKPAPEEYPLFRSINLADGKWHRVAISVEKKSVTMIV
DCKRKVTKTLARGEAATINTQGITVFGTRILDEEVFEGDIQQLLIVADPRAAYDYCEHYS
PDCETPAHQDTPQAQEPEEEYTNYDYGEFYDYSEGAVTTEPAPTEGVKTESIVDGDYFTD
YDYTIVDGSQPETPTAGQIYEENVDDYVTGVEQVGADPTPAVETVAPVDTNDNVNEFRQY
DLNEGEETQETHFDYGDYGDYNVQTETKASIGEEEFGPGVPAETDFRESGVGGSQSYLGE
KGEKGEPAVIEPGMLVEGPQGSPGQAGVPGTPGLQGPPGPPGDPGARGLPGRPGIPGSDG
VPGPAGTILMLPFRAGGEAHKGPVVTAQEAQAQAILSQARLAMRGPPGPAGMAGRSGPVG
GPGAPGLKGDSGENGPQGPRGLQGPTGPPGKSGKRGRNGADGARGMPGEPGTKGDRGFDG
LPGLPGEKGHRGEHGPTGPPGPPGEDGPRGEDGQVGQRGVAGEGGPRGLLGPRGSAGPAG
QRGLPGLDGQAGPKGNMGVQGEPGPPGQQGLPGPHGLIGPQGPIGPPGEKGPHGKQGLAG
LGGADGPPGHPGKEGPPGEKGAAGFPGPMGSIGYPGPRGVKGAEGIRGLKGGKGEKGEDG
FPGFKGDMGLKGDKGEGGVTGPRGEDGPEGPKGMSGPNGDSGPIGLAGEKGKLGVPGLPG
YPGRQGSKGSNGFPGFPGSNGEKGARGVAGKSGPRGQRGPTGPRGGRGARGPTGKPGAKG
TSGSDGPSGPPGERGPQGPQGPVGFPGPKGPNGPPGKDGLPGHPGQRGETGFQGKTGPPG
PGGVVGPQGPTGETGPSGERGHPGSPGPPGEQGLPGAAGKEGGKGDPGPQGPGGKPGPAG
LRGFQGARGLPGGMGPGGLKGGEGPQGPPGPIGSPGERGAAGPGGPIGLTGRNGPTGPPG
PAGEKGAPGEKGPMGPAGRDGIQGPVGLPGSGGPQGPPGEDGDKGEVGGPGQKGGKGDKG
ELGPPGPTGLQGVIGAPGPAGTDGESGPRGQQGMFGQKGDEGSRGFPGLPGPIGLQGLPG
PPGEKGENGDVGAMGPPGPPGPRGPQGPGGASGAQGPPGGIGGPGAVGEKGETGEAGNPG
SPGEPGSAGLRGETGEKGDSGPPGAAGPAGARGPPGDDGPKGNPGPAGFPGDPGPPGEPG
AAGLDGLGGDKGDDGEPGQPGPPGPSGEAGVPGPPGKRGPIGPAGQEGRQGEKGSKGEAG
AEGPPGKTGPVGAQGPSGKPGAEGLRGIPGPVGEQGLPGASGKDGPPGPLGPPGLPGMKG
DSGFKGEKGHPGLIGLIGPPGDAGEKGDRGLPGLQGNAGGKGESGIVGPQGPLGPPGPPG
IPGTHGQKGSKGSIGAAGQKGDPGVMGPPGPPGPTGDIIQSLPIQRVSRKNKRHAEEQAD
EPSDDYSIDGLAMEDVFGSLNNLKQDIERMKFPLGTADNPARTCNDLRLSQPDFPDGEYW
IDPNQGCVGDAIKVFCNFTAGGETCINPDKKSSGVRISNWPKEVPGSWFSEFKRGKILNY
VDVAENSINAVQMTFLKLLSSSARQNFSYVCHQSAAWYDANADSYDKALRFLGSNDEEMS
YDNSPFIKPLIDGCASKQGYSKTILEINTPRIDQLPILDVMLNDFGDSNQRFGFEVGPVC
FLG
NT seq 5412 nt   +upstreamnt  +downstreamnt
atggagacgcagaggcggcccgccaggtggaggacgaaacggtggctgcgggagtccacg
cttgccgctgtcgtcgttttaatcctgcaaactatcgctgtcagagctgccgagccagtg
gatgtgctgaaagctctagactttaagagctccccggaaggcgtcaagaaaacgcccgga
ttctgtacgatgcgccgaggatccaaacccgacattgcgtaccgagtgagcaagaatgct
cagatcagcgcgccgacgaaacagctattcccaggcggagttttcccggaagacttctcc
atcatgttcaccgtcaagcccaaatcaggcctgcagtccttcctgctgtccgtgtacaac
aagcaaggcatccagcagctgggcgtggaggtgggccgttcgcccattttcctgtacgag
gaccagcacggaaagccagcccccgaggagtaccccctgttccgttccatcaacctggct
gacggcaagtggcatcgtgtggccatcagtgtggagaagaagagtgtaaccatgattgtg
gactgtaagagaaaggtgacaaagactctggccaggggcgaggcggcgaccatcaacacg
caaggcatcactgtctttggcaccaggatcctggacgaggaagtctttgagggtgacatc
cagcagctgctgattgtggcagacccccgggccgcctatgactactgtgaacactacagc
cccgactgtgaaacccccgcccaccaggacaccccccaggcccaggaacccgaggaagag
tacactaattatgattatggcgagttctatgactacagcgaaggagcagtcaccactgaa
cctgcccccaccgaaggagtcaagaccgagagcatcgtagatggcgactacttcactgat
tacgactacaccatcgtggacggaagtcagcctgaaactcccacagcaggccagatatat
gaggaaaacgtggacgattacgtcaccggcgtggaacaggtcggggcggacccaactccc
gctgtggaaaccgtcgccccggttgacaccaacgataatgtgaacgaattcaggcaatat
gacctgaacgaaggagaagagacccaggagacacacttcgattacggcgactatggcgac
tacaacgttcaaactgaaacaaaggcctccattggggaggaagagttcggccccggggtt
ccggctgaaaccgacttcagagagagcggcgtgggaggaagtcaaagttatctcggagag
aaaggagagaagggagaacccgccgtcattgaacccgggatgcttgtagaaggaccccaa
ggatcccctggccaggcaggtgttccgggtaccccaggactgcagggtcccccaggacca
cctggagatcccggtgcgaggggtcttccaggacgacctggaattcctggttcggacggt
gtccctgggcccgcaggtaccattctgatgcttccattccgtgccggcggcgaggcgcac
aagggacccgtagtgacggcacaagaggctcaagctcaggccatcctttcccaggccagg
ctggccatgagaggtcctccagggccagcgggcatggcgggaaggtccggtcctgtgggt
ggccctggcgctcccggtcttaaaggggacagcggtgagaacggaccacagggccccaga
ggtcttcagggtccaactggccccccaggaaagtcaggaaagaggggccgtaacggagct
gacggtgcgcgaggaatgccaggagaacccgggaccaaaggcgaccgaggtttcgacggc
cttcccggtctccccggagagaaaggccatcggggggagcacgggccaacggggcctcca
ggacctccaggagaagacgggccaagaggggaagatggacaggttggacagagaggtgtg
gctggagagggtggtcctcgaggtttgctcggccccagaggttccgcgggtcctgcagga
cagcgtggtcttcccggacttgatggtcaagcgggtcccaaaggaaatatgggtgtacaa
ggagaaccaggtcctcccggtcagcagggtttgcctggtcctcatggtctcattgggcct
caaggtccgatcgggcctcctggtgaaaaaggacctcatggtaaacaaggtttggctggt
cttggtggtgccgatgggcctcctggtcatccaggtaaagagggtccaccgggagagaaa
ggagcagctggtttccccggaccaatgggatccatcggctaccccgggccccgcggcgtc
aaaggagcggagggaatccgaggcctgaaaggtggaaaaggagaaaagggagaagatggc
ttccctggctttaaaggcgacatgggcctcaagggcgacaagggcgagggaggtgtcacg
ggaccccgaggagaagatggacccgaaggtcccaaaggcatgtcaggacccaatggcgat
tccggtcccatcggcctggctggagaaaagggaaaactcggagtgcccggcttgccagga
taccctggaagacaaggttccaaaggctccaacggcttccccggtttccccggctctaac
ggcgagaaaggcgcaaggggagttgctggcaaatccggacctcgaggccaacgcggcccg
acgggtccacgtggtgggcgtggtgccagaggcccgacaggaaaaccaggagcaaagggc
acctcaggcagcgatggaccctcaggaccacccggagagaggggtcctcaaggaccacaa
ggacctgtaggcttccctggaccaaagggacccaatggcccaccaggaaaagacggactg
ccaggtcaccctggacagagaggagagacgggtttccaaggaaagacgggaccaccagga
cctggaggtgtcgttggaccccaaggtccaactggagagaccggacccagtggagagcga
ggacacccaggttccccgggcccacccggagagcaaggtttgccaggcgctgctgggaaa
gagggcggaaagggagatccaggccctcaggggcccggcggtaagccaggacctgcaggt
ctgcggggcttccagggggcaagaggtcttcctggtggcatgggtccaggtggcttgaaa
ggaggagaaggtccccagggtccccccggtcccatcggttcccccggtgagaggggcgct
gctggtcccggaggtcccatcggcctgacgggacgcaacggccccacgggaccaccagga
ccggctggcgagaagggagctcctggagagaaaggtcccatgggccccgctggccgcgat
ggcatccaaggtcctgttggtcttcccggttcaggcggacctcagggcccgcccggagag
gacggtgacaagggagaggtcggtggacccggacagaagggaggtaaaggagacaaggga
gaacttggtccaccaggtccaactggtcttcaaggagtgatcggagctcctggtccagct
ggcaccgacggcgagtccggccccagaggtcagcaggggatgtttggccagaaaggagac
gaaggatcccgcggcttccccggtcttccgggacccatcggactacagggtttgccaggc
cctccaggcgaaaagggagagaacggcgacgttggcgctatgggtccccctggaccgcca
ggcccgcgtggccctcagggtcctggtggagccagtggagctcaaggacctccaggtggt
atcggaggaccaggagcggtgggcgagaagggagaaactggtgaagccgggaacccagga
tcacccggagagccaggttcagctggactccgaggagagactggcgagaagggagactcc
ggaccacccggagccgcaggacccgccggggctcgcggaccccctggagatgatggtccc
aagggtaaccctggtcctgccggcttcccaggagatcccggccctcctggtgagccaggt
gctgctggccttgacggtttaggaggtgacaagggagacgacggagagcccggtcaaccg
ggtccgccaggtccttctggagaggccggtgtaccaggacctcctggcaaacggggaccc
attggaccggcaggacaggaaggacgacaaggagagaaaggatccaagggagaagccgga
gctgagggaccacccggaaagaccggtcccgtgggagcccagggcccctccggaaagcca
ggtgctgagggtcttcgaggaatccccggccccgttggcgagcaaggacttcctggagcc
tctggaaaagacggacctcctggaccacttggaccacccggacttcctggcatgaaaggc
gactcgggattcaagggagagaagggccaccccggtctgatcggtctgatcggaccccct
ggagacgctggagagaagggagacagaggtctgcctggacttcagggcaacgctggcggc
aagggtgaatcgggtattgtgggtcctcaaggtcctctgggtcctcctggtcctcctggt
attcctggaactcatggacaaaaaggctccaagggatcaattggtgcagcaggccagaaa
ggagaccccggagtgatgggaccgcctggacctcctggcccaacgggcgacatcatccag
tcgctgcccatccagcgcgtgtcaaggaagaacaagcggcacgccgaggagcaggcggac
gagccgtcggacgactacagcatcgacggcctggccatggaggacgtgttcggctccctc
aacaacctcaagcaggacatcgagcgcatgaaattcccgctgggcaccgccgacaacccc
gcccgcacctgtaacgacctgcgcctcagccagcctgacttcccggacggtgaatattgg
atcgatcccaaccagggctgcgtaggagacgccatcaaagtgttctgtaacttcacggcg
ggcggcgagacgtgtatcaacccagacaagaagtcctcgggagtcagaatatctaactgg
cccaaggaggtgcccggttcttggttcagtgaattcaaacgtggaaaaattttgaactac
gtggacgtggccgagaacagcatcaacgcggtccagatgaccttcttgaagttgctgagc
tcgtcggcgcgccagaacttttcgtacgtgtgccaccagtcggcggcctggtacgacgcc
aacgccgacagttacgacaaggctctgcgcttcctgggctccaacgacgaggagatgtcc
tacgacaacagcccgttcatcaagccgctgattgacggctgtgcgtccaagcagggctac
tccaagacgattctggagatcaacacccctcgcatcgaccagctgcccatcctcgacgtc
atgctcaacgactttggcgactccaaccagaggttcggcttcgaggtcggacccgtctgc
ttccttggctag

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