Syngnathoides biaculeatus (alligator pipefish): 133510397
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Entry
133510397 CDS
T09681
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133510397
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133510397
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133510397
BRITE hierarchy
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
133510397
NCBI-ProteinID:
XP_061694222
LinkDB
All DBs
Position
13:7050528..7312505
Genome browser
AA seq
1803 aa
AA seq
DB search
METQRRPARWRTKRWLRESTLAAVVVLILQTIAVRAAEPVDVLKALDFKSSPEGVKKTPG
FCTMRRGSKPDIAYRVSKNAQISAPTKQLFPGGVFPEDFSIMFTVKPKSGLQSFLLSVYN
KQGIQQLGVEVGRSPIFLYEDQHGKPAPEEYPLFRSINLADGKWHRVAISVEKKSVTMIV
DCKRKVTKTLARGEAATINTQGITVFGTRILDEEVFEGDIQQLLIVADPRAAYDYCEHYS
PDCETPAHQDTPQAQEPEEEYTNYDYGEFYDYSEGAVTTEPAPTEGVKTESIVDGDYFTD
YDYTIVDGSQPETPTAGQIYEENVDDYVTGVEQVGADPTPAVETVAPVDTNDNVNEFRQY
DLNEGEETQETHFDYGDYGDYNVQTETKASIGEEEFGPGVPAETDFRESGVGGSQSYLGE
KGEKGEPAVIEPGMLVEGPQGSPGQAGVPGTPGLQGPPGPPGDPGARGLPGRPGIPGSDG
VPGPAGTILMLPFRAGGEAHKGPVVTAQEAQAQAILSQARLAMRGPPGPAGMAGRSGPVG
GPGAPGLKGDSGENGPQGPRGLQGPTGPPGKSGKRGRNGADGARGMPGEPGTKGDRGFDG
LPGLPGEKGHRGEHGPTGPPGPPGEDGPRGEDGQVGQRGVAGEGGPRGLLGPRGSAGPAG
QRGLPGLDGQAGPKGNMGVQGEPGPPGQQGLPGPHGLIGPQGPIGPPGEKGPHGKQGLAG
LGGADGPPGHPGKEGPPGEKGAAGFPGPMGSIGYPGPRGVKGAEGIRGLKGGKGEKGEDG
FPGFKGDMGLKGDKGEGGVTGPRGEDGPEGPKGMSGPNGDSGPIGLAGEKGKLGVPGLPG
YPGRQGSKGSNGFPGFPGSNGEKGARGVAGKSGPRGQRGPTGPRGGRGARGPTGKPGAKG
TSGSDGPSGPPGERGPQGPQGPVGFPGPKGPNGPPGKDGLPGHPGQRGETGFQGKTGPPG
PGGVVGPQGPTGETGPSGERGHPGSPGPPGEQGLPGAAGKEGGKGDPGPQGPGGKPGPAG
LRGFQGARGLPGGMGPGGLKGGEGPQGPPGPIGSPGERGAAGPGGPIGLTGRNGPTGPPG
PAGEKGAPGEKGPMGPAGRDGIQGPVGLPGSGGPQGPPGEDGDKGEVGGPGQKGGKGDKG
ELGPPGPTGLQGVIGAPGPAGTDGESGPRGQQGMFGQKGDEGSRGFPGLPGPIGLQGLPG
PPGEKGENGDVGAMGPPGPPGPRGPQGPGGASGAQGPPGGIGGPGAVGEKGETGEAGNPG
SPGEPGSAGLRGETGEKGDSGPPGAAGPAGARGPPGDDGPKGNPGPAGFPGDPGPPGEPG
AAGLDGLGGDKGDDGEPGQPGPPGPSGEAGVPGPPGKRGPIGPAGQEGRQGEKGSKGEAG
AEGPPGKTGPVGAQGPSGKPGAEGLRGIPGPVGEQGLPGASGKDGPPGPLGPPGLPGMKG
DSGFKGEKGHPGLIGLIGPPGDAGEKGDRGLPGLQGNAGGKGESGIVGPQGPLGPPGPPG
IPGTHGQKGSKGSIGAAGQKGDPGVMGPPGPPGPTGDIIQSLPIQRVSRKNKRHAEEQAD
EPSDDYSIDGLAMEDVFGSLNNLKQDIERMKFPLGTADNPARTCNDLRLSQPDFPDGEYW
IDPNQGCVGDAIKVFCNFTAGGETCINPDKKSSGVRISNWPKEVPGSWFSEFKRGKILNY
VDVAENSINAVQMTFLKLLSSSARQNFSYVCHQSAAWYDANADSYDKALRFLGSNDEEMS
YDNSPFIKPLIDGCASKQGYSKTILEINTPRIDQLPILDVMLNDFGDSNQRFGFEVGPVC
FLG
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atggagacgcagaggcggcccgccaggtggaggacgaaacggtggctgcgggagtccacg
cttgccgctgtcgtcgttttaatcctgcaaactatcgctgtcagagctgccgagccagtg
gatgtgctgaaagctctagactttaagagctccccggaaggcgtcaagaaaacgcccgga
ttctgtacgatgcgccgaggatccaaacccgacattgcgtaccgagtgagcaagaatgct
cagatcagcgcgccgacgaaacagctattcccaggcggagttttcccggaagacttctcc
atcatgttcaccgtcaagcccaaatcaggcctgcagtccttcctgctgtccgtgtacaac
aagcaaggcatccagcagctgggcgtggaggtgggccgttcgcccattttcctgtacgag
gaccagcacggaaagccagcccccgaggagtaccccctgttccgttccatcaacctggct
gacggcaagtggcatcgtgtggccatcagtgtggagaagaagagtgtaaccatgattgtg
gactgtaagagaaaggtgacaaagactctggccaggggcgaggcggcgaccatcaacacg
caaggcatcactgtctttggcaccaggatcctggacgaggaagtctttgagggtgacatc
cagcagctgctgattgtggcagacccccgggccgcctatgactactgtgaacactacagc
cccgactgtgaaacccccgcccaccaggacaccccccaggcccaggaacccgaggaagag
tacactaattatgattatggcgagttctatgactacagcgaaggagcagtcaccactgaa
cctgcccccaccgaaggagtcaagaccgagagcatcgtagatggcgactacttcactgat
tacgactacaccatcgtggacggaagtcagcctgaaactcccacagcaggccagatatat
gaggaaaacgtggacgattacgtcaccggcgtggaacaggtcggggcggacccaactccc
gctgtggaaaccgtcgccccggttgacaccaacgataatgtgaacgaattcaggcaatat
gacctgaacgaaggagaagagacccaggagacacacttcgattacggcgactatggcgac
tacaacgttcaaactgaaacaaaggcctccattggggaggaagagttcggccccggggtt
ccggctgaaaccgacttcagagagagcggcgtgggaggaagtcaaagttatctcggagag
aaaggagagaagggagaacccgccgtcattgaacccgggatgcttgtagaaggaccccaa
ggatcccctggccaggcaggtgttccgggtaccccaggactgcagggtcccccaggacca
cctggagatcccggtgcgaggggtcttccaggacgacctggaattcctggttcggacggt
gtccctgggcccgcaggtaccattctgatgcttccattccgtgccggcggcgaggcgcac
aagggacccgtagtgacggcacaagaggctcaagctcaggccatcctttcccaggccagg
ctggccatgagaggtcctccagggccagcgggcatggcgggaaggtccggtcctgtgggt
ggccctggcgctcccggtcttaaaggggacagcggtgagaacggaccacagggccccaga
ggtcttcagggtccaactggccccccaggaaagtcaggaaagaggggccgtaacggagct
gacggtgcgcgaggaatgccaggagaacccgggaccaaaggcgaccgaggtttcgacggc
cttcccggtctccccggagagaaaggccatcggggggagcacgggccaacggggcctcca
ggacctccaggagaagacgggccaagaggggaagatggacaggttggacagagaggtgtg
gctggagagggtggtcctcgaggtttgctcggccccagaggttccgcgggtcctgcagga
cagcgtggtcttcccggacttgatggtcaagcgggtcccaaaggaaatatgggtgtacaa
ggagaaccaggtcctcccggtcagcagggtttgcctggtcctcatggtctcattgggcct
caaggtccgatcgggcctcctggtgaaaaaggacctcatggtaaacaaggtttggctggt
cttggtggtgccgatgggcctcctggtcatccaggtaaagagggtccaccgggagagaaa
ggagcagctggtttccccggaccaatgggatccatcggctaccccgggccccgcggcgtc
aaaggagcggagggaatccgaggcctgaaaggtggaaaaggagaaaagggagaagatggc
ttccctggctttaaaggcgacatgggcctcaagggcgacaagggcgagggaggtgtcacg
ggaccccgaggagaagatggacccgaaggtcccaaaggcatgtcaggacccaatggcgat
tccggtcccatcggcctggctggagaaaagggaaaactcggagtgcccggcttgccagga
taccctggaagacaaggttccaaaggctccaacggcttccccggtttccccggctctaac
ggcgagaaaggcgcaaggggagttgctggcaaatccggacctcgaggccaacgcggcccg
acgggtccacgtggtgggcgtggtgccagaggcccgacaggaaaaccaggagcaaagggc
acctcaggcagcgatggaccctcaggaccacccggagagaggggtcctcaaggaccacaa
ggacctgtaggcttccctggaccaaagggacccaatggcccaccaggaaaagacggactg
ccaggtcaccctggacagagaggagagacgggtttccaaggaaagacgggaccaccagga
cctggaggtgtcgttggaccccaaggtccaactggagagaccggacccagtggagagcga
ggacacccaggttccccgggcccacccggagagcaaggtttgccaggcgctgctgggaaa
gagggcggaaagggagatccaggccctcaggggcccggcggtaagccaggacctgcaggt
ctgcggggcttccagggggcaagaggtcttcctggtggcatgggtccaggtggcttgaaa
ggaggagaaggtccccagggtccccccggtcccatcggttcccccggtgagaggggcgct
gctggtcccggaggtcccatcggcctgacgggacgcaacggccccacgggaccaccagga
ccggctggcgagaagggagctcctggagagaaaggtcccatgggccccgctggccgcgat
ggcatccaaggtcctgttggtcttcccggttcaggcggacctcagggcccgcccggagag
gacggtgacaagggagaggtcggtggacccggacagaagggaggtaaaggagacaaggga
gaacttggtccaccaggtccaactggtcttcaaggagtgatcggagctcctggtccagct
ggcaccgacggcgagtccggccccagaggtcagcaggggatgtttggccagaaaggagac
gaaggatcccgcggcttccccggtcttccgggacccatcggactacagggtttgccaggc
cctccaggcgaaaagggagagaacggcgacgttggcgctatgggtccccctggaccgcca
ggcccgcgtggccctcagggtcctggtggagccagtggagctcaaggacctccaggtggt
atcggaggaccaggagcggtgggcgagaagggagaaactggtgaagccgggaacccagga
tcacccggagagccaggttcagctggactccgaggagagactggcgagaagggagactcc
ggaccacccggagccgcaggacccgccggggctcgcggaccccctggagatgatggtccc
aagggtaaccctggtcctgccggcttcccaggagatcccggccctcctggtgagccaggt
gctgctggccttgacggtttaggaggtgacaagggagacgacggagagcccggtcaaccg
ggtccgccaggtccttctggagaggccggtgtaccaggacctcctggcaaacggggaccc
attggaccggcaggacaggaaggacgacaaggagagaaaggatccaagggagaagccgga
gctgagggaccacccggaaagaccggtcccgtgggagcccagggcccctccggaaagcca
ggtgctgagggtcttcgaggaatccccggccccgttggcgagcaaggacttcctggagcc
tctggaaaagacggacctcctggaccacttggaccacccggacttcctggcatgaaaggc
gactcgggattcaagggagagaagggccaccccggtctgatcggtctgatcggaccccct
ggagacgctggagagaagggagacagaggtctgcctggacttcagggcaacgctggcggc
aagggtgaatcgggtattgtgggtcctcaaggtcctctgggtcctcctggtcctcctggt
attcctggaactcatggacaaaaaggctccaagggatcaattggtgcagcaggccagaaa
ggagaccccggagtgatgggaccgcctggacctcctggcccaacgggcgacatcatccag
tcgctgcccatccagcgcgtgtcaaggaagaacaagcggcacgccgaggagcaggcggac
gagccgtcggacgactacagcatcgacggcctggccatggaggacgtgttcggctccctc
aacaacctcaagcaggacatcgagcgcatgaaattcccgctgggcaccgccgacaacccc
gcccgcacctgtaacgacctgcgcctcagccagcctgacttcccggacggtgaatattgg
atcgatcccaaccagggctgcgtaggagacgccatcaaagtgttctgtaacttcacggcg
ggcggcgagacgtgtatcaacccagacaagaagtcctcgggagtcagaatatctaactgg
cccaaggaggtgcccggttcttggttcagtgaattcaaacgtggaaaaattttgaactac
gtggacgtggccgagaacagcatcaacgcggtccagatgaccttcttgaagttgctgagc
tcgtcggcgcgccagaacttttcgtacgtgtgccaccagtcggcggcctggtacgacgcc
aacgccgacagttacgacaaggctctgcgcttcctgggctccaacgacgaggagatgtcc
tacgacaacagcccgttcatcaagccgctgattgacggctgtgcgtccaagcagggctac
tccaagacgattctggagatcaacacccctcgcatcgaccagctgcccatcctcgacgtc
atgctcaacgactttggcgactccaaccagaggttcggcttcgaggtcggacccgtctgc
ttccttggctag
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integrated database retrieval system