Syngnathoides biaculeatus (alligator pipefish): 133512742
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Entry
133512742 CDS
T09681
Symbol
col5a2a
Name
(RefSeq) collagen, type V, alpha 2a isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
133512742 (col5a2a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133512742 (col5a2a)
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133512742 (col5a2a)
BRITE hierarchy
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
133512742
NCBI-ProteinID:
XP_061698660
LinkDB
All DBs
Position
14:complement(16375312..16415527)
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AA seq
1498 aa
AA seq
DB search
MMDFVHLRTFLFLALSIAQVLIVTCQDDEDDGSCTADGQVYPNRDIWKPEPCRICVCDNG
QVLCDNIQCEELINCEKMFIPEGECCPICQSETSTGGGGGGGGGGTYGGGRVYKGQKGEP
GDVPIVTGIRGRPGPMGPPGAPGERGPRGNKGRPGLRGTPGYDGEPGVPGQPGEPGPPGH
PTHPGGLGAQMAGVLEGKNAPQSILSGSRGEPGARGAPGPTGSPGQAGPQGPSGDVGDPG
HMGPSGQRGPEGPPGKPGEDGEPGKSGNTGEVGFPGSQGARGFPGTPGPPGLKGHRGHGG
PLGQKGEHGAVGSKGATGPPGPMGGPGPMGPAGMPGERGRSGPGGTPGKRGLPGNVGKPG
PMGPLGLSGPPGYPGTPGMKGQPGPTGVRGPEGPQGQRGETGHLGRPGPVGLRGPMGTDG
GPGAKGPVGNLGPQGPGGHLGPAGPPGPQGSTGQPGIKGQLGDVGVPGFKGEAGPKGEVG
PHGSQGVIGPQGEEGKRGPRGDPGTVGPPGPVGERGSPGNRGFPGADGLPGPKGSQGDRG
TSGPSGPKGSLGDPGRTGEPGLPGARGLTGTPGVQGAEGKPGPLGAPGEDGRPGPAGSIG
NRGPAGTMGIPGPKGFNGDPGKTGEQGSAGVAGQRGPPGKDGEVGPAGPPGPSGVAGDRG
EQGPPGVNGFQGLPGNQGPPGESGKPGDLGIPGELGAVGQIGPRGERGIPGERGELGPIG
LQGPKGIPGAPGPDGPKGSPGPPGALGDVGPPGLQGMPGERGISGPSGPKGDRGAIGEKG
SEGTPGNDGARGAPGPVGPLGPAGPSGEKGEPGPKGPAGPPGSRGVPGARGDNGPIGAVG
FAGPPGPDGQPGVKGETGEPGQKGDAGSPGPQGLAGAHGPPGPIGVAGLKGGRGTQGAPG
PTGFPGSAGRVGPPGPTGPVGEPGPLGAPGKEGPAGLRGDHGANGRQGERGPPGPPGSPG
DKGDSGEDGPTGPDGPPGPAGTTGQRGIVGLPGLRGERGMPGLPGPAGPPGKQGSPGSTG
EKGPPGPVGVPGANGPRGDPGPDGPAGSDGPPGKEGILGQRGDRGDHGPEGLAGPQGLPG
PPGPVGVAGEAGKRGHAGSRGPVGPPGSAGKRGLVGPQGPRGDKGDLGDHGERGQKGHRG
FTGLQGLPGPPGTTGEQGASGIIGPNGARGPPGPIGPPGKEGYIGQPGPMGPPGTRGISG
EAGPEGPPGEPGPPGLPGPPGPPVAAMDDLFGGPHDYEDAPPPPPEFSEDEAQPNNNSTT
ILPVDPGVQATLKALTSQIDSMKSPDGSRKHPARTCDDLKRCYPSKKSGEFWVDPNQGSA
EDAIQVYCNLETGETCISANPSSLPRKNWWSSSRNKPVWFGADINRGTQFTYGNKDQSAN
ALRVQMTFIRLLSKEASQSITYHCKNSVGYKDQKTGNLKKAVLLKASNDLELKAEGNNRF
RYTVVEDSCTQANGNWGKTVFEYRTQKTARLPIVDIAPVDIGGPNQEFGIDIGAVCFL
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atgatggactttgtacatttaaggactttcctttttttggcgctctccatcgctcaggtt
ttgattgttacatgccaggatgatgaagatgatggcagctgcacagcagatggccaagta
tacccaaacagggacatctggaagccggagccatgccggatctgtgtgtgcgataacggc
caggtcctctgtgacaatatccagtgtgaagagctgatcaactgcgagaagatgttcatc
cccgagggagagtgctgccccatatgtcagagtgaaacctccactgggggcggaggtggc
ggcggcggagggggcacttatggtgggggcagagtttacaagggccagaaaggagagcct
ggtgatgtcccaattgtgactggaattcgaggtcgtcctggaccaatgggaccacctggt
gcaccaggagaaagaggacccagaggaaataaaggaaggcccggcctgcgaggcactcca
ggttacgatggagagcctggagttccaggtcagcctggtgaacccggacctccagggcac
ccgacgcatccaggaggccttggggcgcagatggctggagtgttggaaggaaaaaatgca
ccgcaaagcatattaagtggctcaaggggtgaacctggagcaagaggagctcctgggccc
actggttcgcctggtcaagctggaccacaaggaccatccggagatgttggggatccaggg
catatgggtccgtctggccaaagaggacctgagggtcctccggggaaaccaggagaagac
ggtgaaccaggcaagtcaggaaatactggagaagttgggttcccagggtcacaaggagca
agaggatttccaggtacaccagggcctcctggcctaaaaggtcacagagggcatggagga
ccacttggtcaaaaaggagagcatggagcagttggatcaaagggtgccacaggcccacct
ggtccaatgggagggcctggaccaatgggtcctgctggtatgcctggggagaggggtcgc
tctggacctggtggtacaccgggtaagcgtggtctacctggaaatgttggaaaaccaggt
ccaatgggtcctctgggtctcagtggccctccaggatatccgggaacaccaggcatgaag
ggacaaccaggccctacaggtgttcggggtccagagggtcctcaaggtcagagaggagag
actggtcatctgggaagacctggaccagttggtctaaggggacccatgggtacagacggt
ggcccgggagccaaaggaccagtgggaaatcttggtccacaaggcccaggtggacatctt
ggacccgccggccctccgggacctcagggaagcaccggccagcctggcatcaaaggacaa
ctgggggatgtgggtgtacccgggtttaagggagaggctggacccaaaggagaagttggt
ccccatggatcccagggagtgattgggcctcagggtgaggaagggaagcgggggcctagg
ggagatcctggaactgttggtccccctggtcctgttggtgagagaggttccccgggtaat
cgaggattccctggtgctgatgggcttcctggaccgaagggttctcaaggagatcgtgga
acatctggcccatcaggaccaaaaggttccttaggtgacccaggccgtacaggagaacct
ggtctaccaggtgcaaggggtcttactggtactcctggagtccagggagcagagggaaag
ccagggccactgggtgcacctggtgaagatggtcgccccggcccagcaggctccattgga
aatagagggcctgcagggacaatgggaataccaggccccaagggatttaatggtgacccg
ggaaagactggtgaacagggatctgcaggagtagctggtcaaaggggtccccctggaaaa
gatggagaggtgggcccagctggcccacctggtccatcgggggttgcaggtgacagagga
gaacagggacctccaggtgtgaatggattccagggtttaccaggaaatcaaggacctcct
ggagaatctgggaaacctggtgacctaggcattcctggagagctcggcgctgttggtcaa
attggacctaggggtgagcgtggaatacctggggagagaggcgagctgggtcctattggt
ctgcagggacccaagggaatccctggagcacctggtccggatgggccgaagggtagtcct
ggtcctcctggtgctcttggtgatgtgggtcctccaggtcttcagggaatgccaggagaa
aggggcatctctggcccctctggtccgaaaggtgatagaggtgccattggtgagaaagga
tcagaaggtacacctggaaatgatggcgcaaggggtgcacctggccctgttggcccatta
ggacctgcaggacccagtggtgaaaagggagaacctggaccaaaaggaccagctggacct
ccaggttctagaggggtgcctggagcaagaggcgacaatggcccaattggtgcggttggt
tttgctggaccacctggtcctgatggccaacctggagttaaaggagagactggagagcct
ggccagaaaggagatgctggttccccaggacctcaaggcctagctggtgctcacggacct
cctgggcccataggtgttgctggactaaaaggtggaagaggaacacagggtgcaccggga
cccactggcttccctggatctgcaggaagagttggcccacctggtccaactggtccagtt
ggtgaacctggaccactgggagctcctggaaaagagggtcctgccggtctacgtggtgac
catggagcaaatggaagacaaggagagcgaggaccaccgggaccgccaggaagcccagga
gacaagggagattctggagaagatggcccaacgggtcctgacggtcctccaggcccagct
ggaactacaggccagagaggcattgtgggtcttccaggtcttcgaggagaacggggtatg
ccaggtctgccagggccagcaggcccaccaggaaaacagggttcccctggatcaactgga
gaaaaaggaccaccaggaccagttggcgttccaggggccaacggcccacgtggtgatcct
ggtcctgatggccctgctggctctgatggtccaccaggcaaagaaggtattcttggacaa
cggggagacagaggtgatcatggtccagagggtttggcaggtcctcagggacttcctggc
ccgccaggtcctgtcggagtcgctggagaagctggaaaacgaggacatgctggctccaga
ggacctgttggtcctcccggatcagctggaaagagagggcttgtgggaccccaaggacca
cggggagataagggtgatttgggtgatcacggagagcgagggcagaagggtcatcgtgga
tttactggtttgcagggtcttcctggacctcctggtacaacaggtgaacaaggagcttct
ggaattattggaccaaacggtgcacgggggccacctggtcctattgggccccctggaaaa
gaaggatacataggacagcctgggccgatgggacctccaggaactcgtggaatctcagga
gaagctggaccagagggccctccaggagaacctggacccccaggccttcctggaccacca
ggacctcctgtggcagctatggatgatctgtttggaggccctcatgactacgaagatgcc
ccccctcctccccctgagttcagtgaggatgaggctcaacccaacaacaactccaccacc
atcctaccggtggatcccggcgtgcaggccaccctgaaagctctcaccagccagattgac
agtatgaagagcccagatggcagcaggaagcaccctgctaggacctgtgatgacctcaag
agatgctacccctcaaagaagagcggtgaattctgggtggaccctaaccaaggcagtgca
gaggatgccatccaagtgtactgtaacttggagaccggagagacctgcatctctgccaac
ccatccagcctacctcgtaaaaactggtggagctcttctaggaacaaacctgtttggttt
ggagctgatatcaacagaggaacacaattcacttatggcaacaaagaccagtcagcgaat
gccctcagagtccagatgaccttcattcgccttctgtccaaagaagcgtctcagtccatc
acctaccactgcaagaactctgtgggctacaaggaccagaagacgggtaacttgaaaaag
gctgtgctgctcaaagcctccaatgacctggagctcaaagcagagggaaataaccgcttc
agatacaccgtggtggaagactcctgcacccaagcaaatggcaactggggcaagacagtg
tttgagtacaggacacagaaaaccgccagacttcccattgtggatattgcccctgtggac
attggtggtccaaatcaagagttcggtatcgatattggggcagtgtgcttcttataa
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