Sphingomonas bisphenolicum: SBA_ch1_04210
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Entry
SBA_ch1_04210 CDS
T08354
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sbin
Sphingomonas bisphenolicum
Pathway
sbin03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SBA_ch1_04210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbin03400
]
SBA_ch1_04210
Enzymes [BR:
sbin01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
SBA_ch1_04210
DNA repair and recombination proteins [BR:
sbin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SBA_ch1_04210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
BBF68221
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All DBs
Position
1:438991..440418
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AA seq
475 aa
AA seq
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MRSPALYRVALTAPDDFDGWRDAARRLAVNGVDPADVVWQAGEMAGGDLFGDAPLPPDRP
GAGFSVPRAFVDLAQSAILHRDPERFALLYALLCRLRDRPGLMEDKADPLLRRVDILAKA
VRRDIHKMRAFVRFRALEDAVGPRFVAWFEPDHHIVRANAGFFLRRFATMHWSILTPEAS
IHWDGETLSEGPGASRGDAPADDPVEDLWKGYYAAIFNPARLKTKAMLSEMPKKYWRNLP
EAALIPDLVAGAQAREAAMIATAPLPEKAPPKRQGNAATVWAALREEAMTCARCPLHRDA
TQTVFGEGPLDAPLLFIGEQPGDQEDLAGRPFVGPAGQLFDRALAQAGVDRSRAYVTNAV
KHFKFERRGKRRLHQSPDAGEIEACRWWLKQEIDLVRPRIIVALGASAARAMLGRAVTIS
RARGQAIALDNGAEGWVTVHPSYVLRLPDEDCREEELARFVADLRGIGERLKALP
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgagatcgccagccctgtatcgcgtcgcgctgaccgctccggacgatttcgacggctgg
cgggatgcggcgcggcggctggcggtcaacggcgtcgatccggccgatgtcgtctggcag
gctggggagatggcgggcggcgacctgttcggcgacgcgcccctgccgcccgaccggccc
ggcgcgggcttctcggtgccccgcgccttcgtcgacctggcgcagagcgcgatcctgcat
cgcgaccccgaacgcttcgccctgctttatgcgctgctatgccggctgcgcgaccggccg
gggctgatggaggacaaggccgacccgctgctgcgccgggtcgatatactggccaaggcg
gtgcgccgcgacatccacaaaatgcgcgccttcgtgcgcttccgcgctttggaggatgcg
gtcggcccgcgcttcgtcgcctggttcgagcccgaccatcatatcgtccgcgccaatgcc
ggtttcttcctgcgccgcttcgcgaccatgcactggtcgatcctgaccccggaggccagc
atccattgggatggcgagacattgagcgagggaccgggcgccagccgtggggacgccccc
gcggacgacccggtcgaggatctatggaagggctattatgccgcgatcttcaatccggcc
cggctcaagaccaaggccatgctgtccgaaatgccgaaaaaatactggcgcaacctgccc
gaagccgcgctcatccccgaccttgtcgccggcgcgcaagcgcgcgaggcggccatgatc
gcgaccgcgcccctgccagaaaaggcgccccccaaacgccagggcaatgcggcgaccgtc
tgggcggccctccgcgaggaggcgatgacttgcgcccgctgtccgctgcaccgggacgcc
acgcagacggtgttcggcgaaggcccgctcgacgcgcctttgctcttcatcggcgagcag
cccggcgatcaggaggatctggccgggcggccgttcgtgggaccggcgggccagttgttc
gaccgggcgctggcgcaggccggggtggaccggtcgcgcgcttacgtcaccaatgcggtc
aagcatttcaagttcgaacggcgcggcaagaggcggctgcatcaatcacccgacgccggc
gaaatcgaagcctgccgctggtggctgaagcaggagatcgatctggttcgcccgcgcatc
atcgtcgcactgggcgcgtcggcggcccgcgccatgctgggcagggcggtgacaatcagc
cgggcgcggggtcaggcgatcgcgctcgacaacggagcggaaggctgggtgacggtgcat
cccagctatgtgctgcgtctccccgacgaggattgccgcgaggaggaactggcgcgcttc
gtcgcggacctgcgggggatcggtgagcggctgaaggcgctgccataa
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