Sphingomonas bisphenolicum: SBA_ch1_27820
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Entry
SBA_ch1_27820 CDS
T08354
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sbin
Sphingomonas bisphenolicum
Pathway
sbin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SBA_ch1_27820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbin03400
]
SBA_ch1_27820
Enzymes [BR:
sbin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SBA_ch1_27820
DNA repair and recombination proteins [BR:
sbin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SBA_ch1_27820
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBF70582
LinkDB
All DBs
Position
1:complement(2836285..2838783)
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AA seq
832 aa
AA seq
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MAKAQTKAKEDSLATYRAKRDFALTAEPSGASHPASGNGFVVQKHAASRLHYDFRIELDG
VLVSWAVTRGPSVNPDDKRLAVRTEDHPLDYARFEGTIPKGQYGGGTVMVWDNGTWESIP
GKDPRETLPEGHLHFILHGRRMQGEWILFRLKPRGKEKGENWILRKVNDGFAGGSDDLIG
THLTSVDSGRTMEEIAAGKSVPMRKATTTGQPAETRKPARKTKSAAGKPPAFQPVQLAAL
VDHVPTGNAWLHELKYDGYRTLLAIGGGEGRAYTRSGLDWSDRFSRLIADAVALDVESAL
IDGEAVIVLPDGRTSFQALQAALKDDPGKIDYFAFDLLELNGEDLTQRPLVERKELLSAL
IGKGAGHLRYSDHIVGRGEQLFDSFCGAGLEGVISKRADARYSGSRSGSWVKTKCIRRQE
FVIVGWLPSDKQRGFRSLLLGVNEHGRLRYAGKVGTGFTGDEMERLMEIMAPLEQTSPTV
EAPRAAVRGAHWVKPRLVAEIAFMEFTDEGVLRHSSYLGLREDKKPEAVVLEVEAPVAVA
AAPKKGSGIKVSNRDRVIFPEGKLTKGELADYYEAVAEIMLPWTGSRPISLVRCPQGRDK
KCFFQKHDAGSFGDDVKQVAILEKDGHEESYLFVDMPAGLLTCVQMGTIEFHGWGARIED
VEKADRLVFDLDPDESLKFKDVVSAAFHLQDVLGQMGLATFPMVTGGKGVHVIAPLTPTA
EWPQVKDFAHRFATALAQAEPERFTAALAKAKRTGRIFIDYLRNQRGATAVMPYSARSRP
FAPIAVPLTWDELKDLDTPAHWHIGDAAEMVKRARSKNLAHWGRADQVLPDL
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggccaaagcgcaaaccaaagcgaaggaagacagtctcgcgacctatcgcgcgaagcgg
gactttgccctgaccgccgaaccgtccggcgcaagccatcctgcatcaggcaatggcttt
gtcgtccagaagcatgcggcaagccggctccattatgattttcggatcgagctggacggc
gttcttgtcagctgggcagtgacacgaggacccagcgtcaatcccgatgacaagcgcctt
gcggtgcggaccgaggatcatccgctcgattatgcccggttcgaaggcaccattcccaaa
gggcaatatggtggcggcactgtcatggtctgggacaatggcacatgggaatcgatcccg
ggcaaggatcctcgcgagacgttacccgagggccaccttcacttcatcctgcacggacgc
cggatgcagggagaatggatcctcttccgtctgaaaccgcgtggcaaggaaaagggcgag
aactggatcttgcgcaaggtcaacgacggttttgcaggcggctctgacgatctgatcggc
acgcatctcaccagcgtcgacagcgggcggacgatggaggagattgccgctggcaagtct
gttccgatgcgtaaagcgaccacaacggggcagcccgccgagacgcgcaagccggcgaga
aagacaaaatctgctgctggaaaacccccagcgtttcagcctgtccagctggcggcgctc
gtcgatcatgtgccgaccggcaatgcttggctgcatgagctgaaatatgacggatatcgc
acattgctggcgatcggcggcggcgagggcagggcctatacccgctccggcctcgactgg
tctgaccggttttccaggctgatcgctgacgctgtcgcactcgacgtggaaagcgcgctg
atcgatggcgaggccgtcattgtcctgcccgatggccgcaccagctttcaggcgttgcag
gcggctcttaaggatgaccccggtaagatcgattatttcgcgttcgacctccttgagctt
aacggggaggatctgacccagcggccgctggttgaacgcaaggagctgctttcggccctg
atcggtaagggcgctggccatctgcgctactccgaccatatcgtcggacgcggcgagcaa
ttgttcgacagcttctgcggcgcggggcttgagggcgttatctccaagcgtgccgatgcc
cgctattccggctcccgttcgggaagctgggtcaagaccaagtgcatccgccgccaggaa
ttcgtgatcgtcggttggcttccgtcggacaagcagcgcggctttcgatcgctgctgctg
ggtgtcaacgagcatggcaggctgcgctatgcaggcaaggtcggcacggggttcacgggc
gacgagatggagcggctgatggagatcatggcgccgctcgagcagacatctccaacggtg
gaggccccgcgcgcagccgtgcgcggcgcgcactgggtaaagcccaggctggtcgcggag
atcgcctttatggaattcacagacgagggagtgctccgccattccagctatctggggctc
cgggaagacaagaaaccggaagccgtcgtgctcgaagttgaggcgccggttgcggtggcg
gccgcaccgaagaagggcagcgggatcaaggtcagcaaccgcgatcgggtgatatttcct
gagggtaagctgaccaagggcgaacttgccgattattatgaggccgtcgccgaaatcatg
ctgccctggaccggaagtcggccaatcagtctggtccgctgtccacagggccgggacaag
aaatgcttcttccagaagcatgacgccggcagcttcggggacgacgtcaaacaggtcgcg
atcctggagaaggacggccatgaggaatcctatcttttcgtcgatatgccggctggcctt
ctgacctgcgttcagatgggaaccatcgaatttcacggctggggtgcgcggatcgaggat
gtcgagaaagccgaccgcctcgtcttcgacctcgatcccgatgaaagcctgaagttcaag
gatgtggtctcggccgccttccatcttcaggatgtacttggccaaatggggctggcgaca
ttcccgatggtgacgggagggaagggggtgcatgtcatcgcgccattgacccccacagcg
gagtggccgcaggtgaaggatttcgcgcaccgctttgccacggcgttggcgcaggcagag
cccgagcgctttacggcggcactcgccaaagccaaacgcacgggccggattttcatcgat
tatttgcgcaaccagcgcggcgcgacggcggtcatgccgtatagcgcccgctcgcggccg
tttgcgccaatcgctgtgccgcttacatgggacgagctcaaagacctcgacacgcctgca
cactggcacatcggcgacgctgcggagatggtgaagcgcgcccgatccaaaaatctggcg
cattggggtcgggccgatcaggtcctgcctgacctgtga
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