Sphingomonas bisphenolicum: SBA_pBAR3_0380
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Entry
SBA_pBAR3_0380 CDS
T08354
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sbin
Sphingomonas bisphenolicum
Pathway
sbin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sbin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SBA_pBAR3_0380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbin03400
]
SBA_pBAR3_0380
Enzymes [BR:
sbin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SBA_pBAR3_0380
DNA repair and recombination proteins [BR:
sbin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SBA_pBAR3_0380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
BBF72471
LinkDB
All DBs
Position
pBAR3:complement(33981..35837)
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AA seq
618 aa
AA seq
DB search
MARMTAAPRKAASTSRAPPFRAVQLATLVDTVPTGNRWLHEMKYDGYRVLLSVGGGEAVA
YTRSGLDWSEKFSGLVADALKLKVSSALIDGEAVVLDADGRSSFQALQNALKGAPASIDY
FAFDLLELDGEDLTQLPLTERKAKLAKILPKGKSRLRYSDHIAGNGEKLLNQFCAAGLEG
VISKRADGRYVGSRSGGWLKTKCIKRQEFVVVGWTPSDKSRLFRSLILGVHEDGVLRYAG
KVGTGFDTQEIIDLMAVMAPLEQEAPTVKAPRAEVRGAHWLRPTLVAEIAFTEMTNEGTL
RHPSFLGLREDKKPEAVVVETEAPAEAVTAETSSITITNRDRVIFPEGKLTKGQLADYYA
QVAPIMLPWIGSRPISLVRCPQGRAKKCFFQKHDAGSFGDAVRHVAIREKDGHDEPYLYV
DTADGLLTCVQMGTIEFHGWGARIEDVERADRLVFDLDPDEGLDFENVRSAAFHFREILQ
SIGLETFPMVTGGKGVHVIAPLVPQAEWPEVKDFAHRLAQAVAQSDPEHFTAALPKAQRK
GRIFVDYLRNQRGATAVMPYGVRAREGAPVAVPITWKEMETIDKPSHWTIRDGTELVKRA
GSKALSGWGRADQTLPDL
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcatgaccgcagcgccaaggaaagcggcttccaccagccgcgcgccgcccttc
cgcgcagtgcaactcgcaacgctggtcgacacggttcctaccggcaaccgctggctgcac
gagatgaagtatgacggctaccgcgtgctgctgagcgtcggcgggggcgaggccgttgcc
tatacccgctcgggtctcgactggtcggagaagtttagcggactggttgccgacgccctg
aagctgaaggtttcctccgcgctcatcgacggcgaggcggtcgtgctcgatgccgacggc
cgctcgagtttccaggccctgcaaaacgcgctcaaaggggcgccggcttcgatcgattat
ttcgcgttcgacctgctggagctcgacggcgaggatctaacccagttgccactcacggag
cgcaaggcgaagctcgcgaagatcctgcccaagggcaagtcgcggttgcgctattcggat
cacattgccggcaatggcgagaagttgctcaaccagttctgcgcggcgggcctcgaaggg
gtgatctcgaagcgggccgacggccgctatgtcggctcgcgatcgggcggctggctgaag
accaaatgcatcaagcggcaggagttcgtcgtggtcggctggaccccttcggacaagtcg
cggttattccgatcgctgatcctgggtgtccatgaggacggcgtcctgcgctatgccggc
aaggtcggcaccggcttcgatacccaggagatcatcgacctgatggcggtgatggcgccg
ctcgagcaggaggcgccgaccgtcaaggcgccgcgcgcagaggtgcgcggggcgcactgg
ctgcggccaacgctggtcgcagaaattgcatttaccgaaatgaccaatgaggggacgctt
cggcatccgtcctttctgggcctacgcgaagacaagaagcccgaggctgtggtcgtcgag
accgaggcgccggctgaggcggtgacggccgagacgtcgtcgatcacgatcacaaaccgc
gaccgtgtcatttttcccgaggggaagcttaccaagggtcagcttgccgattattatgcg
caggtcgctccgatcatgctgccctggatcggttcgcggccgatcagcctcgttcgctgc
ccgcaaggccgagccaagaaatgcttcttccagaagcatgacgcgggcagttttggcgac
gctgtacggcatgtcgccattcgcgagaaggacgggcacgacgagccctatctctatgtc
gataccgcggacggcctgctcacatgcgtacagatgggcacgatcgagttccatggttgg
ggcgccaggatcgaggatgtcgagagggccgaccggctggtcttcgatcttgatcccgac
gagggcctggatttcgagaatgtgcgcagcgccgccttccactttcgcgagatcctgcag
tcgatcgggctcgagaccttcccgatggtgaccggcggcaagggcgtccatgtgatcgcg
ccgcttgttccgcaagcggagtggccggaggtgaaagactttgcgcatcggctggcccaa
gcggttgcccagagtgaccctgagcatttcacggccgccctgccgaaagcgcagcgcaag
ggccgcatctttgtcgactatcttcgcaaccagcgcggtgcgacggcggtcatgccctat
ggggtccgcgcgcgcgaaggcgcgccggtcgccgtacccatcacatggaaggaaatggag
acgatcgacaagccctcgcactggaccattcgggatggcaccgaactggtgaagcgggcc
ggctccaaggcgctcagcggttggggccgcgccgaccagaccctgcctgacctgtga
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