Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 101038957
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Entry
101038957 CDS
T04350
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
sbq
Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Pathway
sbq04151
PI3K-Akt signaling pathway
sbq04510
Focal adhesion
sbq04512
ECM-receptor interaction
sbq04820
Cytoskeleton in muscle cells
sbq04926
Relaxin signaling pathway
sbq04933
AGE-RAGE signaling pathway in diabetic complications
sbq04974
Protein digestion and absorption
sbq05146
Amoebiasis
sbq05165
Human papillomavirus infection
sbq05200
Pathways in cancer
sbq05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
sbq00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101038957 (COL4A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101038957 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101038957 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101038957 (COL4A1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101038957 (COL4A1)
09154 Digestive system
04974 Protein digestion and absorption
101038957 (COL4A1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101038957 (COL4A1)
09162 Cancer: specific types
05222 Small cell lung cancer
101038957 (COL4A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101038957 (COL4A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
101038957 (COL4A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101038957 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sbq04147
]
101038957 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
sbq00536
]
101038957 (COL4A1)
Exosome [BR:
sbq04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101038957 (COL4A1)
Glycosaminoglycan binding proteins [BR:
sbq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101038957 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101038957
NCBI-ProteinID:
XP_010337188
LinkDB
All DBs
Position
Unknown
AA seq
1666 aa
AA seq
DB search
MGAWCELYVGLAVPKALRVYQGDTEGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVIGFP
GMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIP
GCNGTKGERGPLGPPGLPGFTGNPGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGPPGL
TGPPGLPGLPGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPGVP
GQAQVQEKGDYATKGEKGQKGEPGFQGMPGVGEKGDPGKPGPRGKPGKDGDKGEKGSPGF
PGDPGYPGLVGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGF
PGIQGQPGPPGLPVPGQIGAPGFPGERGEKGERGFPGLSLPGPSGRDGLQGPPGLPGPPG
QPGYTNGIVECQPGPPGDQGPPGIPGQPGLAGEIGEKGQKGESCLICDTAGYRGPPGPQG
PPGEIGFPGQPGAKGDRGLPGRDGLAGVPGPQGTPGLIGQPGAKGEPGEIYFDLRLKGDK
GDPGFPGQPGVPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDTGPP
GPPGYGPAGPIGDKGEAGFPGGPGSPGLPGPKGEAGKVVPLPGPPGAEGLPGSPGFPGPQ
GDRGFPGTPGRPGLPGEKGTMGQPGIGFPGPPGPKGVDGLPGDMGPPGTPGRPGFNGLPG
NPGVQGQKGEPGVGLPGLKGLPGIPGIPGAPGEKGSVGVPGVPGERGAIGPPGLQGVRGD
PGPPGLPGPMGSPGVPGIGPPGARGPPGGQGPAGLAGPPGIKGEKGFPGFPGLDMPGPKG
DKGAQGLPGITGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPVGSPGLPG
EKGDHGFPGSSGPRGDPGLKGDKGDAGLPGKPGSMDKVDMENMKGEKGDQGEKGQIGPIG
EKGSRGDPGSPGVPGKDGQAGQPGQPGPKGDPGISGIPGSPGLPGPKGSVGGMGLPGTPG
EKGVPGIPGPQGAPGLPGEKGAKGEKGQAGPPGIGIPGLPGVKGDQGIAGFPGSPGEKGE
KGSIGIPGVPGSPGLKGSPGSVGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP
TGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGIP
GAKGEQGFMGPPGPQGQPGLPGSPGHAMEGPKGDRGPQGQPGLPGLPGPMGPPGLPGIDG
IKGDKGHPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGIQGFQGAKGLPG
LQGIKGDQGDQGVPGAKGLPGPPGPPGPYDIIKGEPGLPGPEGPPGLKGLQGPPGPKGQQ
GVTGLAGIPGPPGIPGFDGAPGQKGEMGPAGPTGPRGFPGPPGPDGLPGSMGPPGTPSVD
HGFLVTRHSQTIDDPQCPSGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTMPFL
FCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCAVCEAPAMVMAVHSQ
TIQIPPCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCN
YYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgggagcctggtgtgagctgtacgtggggctggctgtccccaaagcactcagggtgtac
cagggagacacagaaggaggctgtgctggctctggctgtggtaaatgtgactgccatgga
gtgaagggacagaagggtgaaagaggcctcccagggttacagggtgtcatcgggtttccc
ggaatgcaaggacccgagggaccacagggaccacctggacaaaagggtgacactggagaa
ccaggactacccggaacaaaagggacaagagggcccccaggagcgtctggctaccctgga
aacccaggacttcccggtattcctggccaagacggcccgccaggccccccaggtattcca
ggatgcaacggcaccaagggagagagagggccgctcgggccccccggcttgcctggcttc
actggaaatcccggaccaccaggcttaccaggaatgaagggtgatccaggcgagatactt
ggccatgtgcccgggatgctgttgaaaggtgaacgaggatttcccggacccccaggactg
acgggcccaccaggactgccagggcttccaggccctgttgggcctccaggatttaccgga
ccaccaggccccccgggtcctcccggccctccaggtgaaaaggggcaaatgggcttaagt
tttcaaggaccgaaaggtgacaagggtgatcagggggtcagtgggcctccgggagtgcca
ggacaagctcaagttcaagaaaaaggagactatgccaccaagggagaaaagggccaaaaa
ggtgaacctggatttcaaggaatgccaggggtcggagagaaaggtgaccccggaaaaccc
ggacccagaggaaaacctggaaaagacggtgacaaaggcgagaaagggagccctggtttt
cctggcgatcccgggtacccaggactcgtaggccgccagggcccgcagggagaaaaaggt
gaagcaggtcctcccggcccacctggaattgttataggcacaggacctttgggagagaaa
ggagagcggggctaccctgggactccggggccgagaggagagccgggcccgaaaggtttc
ccgggaatacaaggccaacccggacctccaggcctcccggtgcctgggcagatcggtgcc
cctggcttccccggagaaagaggagaaaaaggtgaacgaggatttccgggcctatctctg
ccaggacccagtggaagagacgggctccagggtcctcctggcctccccgggcctcctggg
cagcctggctacacaaatggaattgtggaatgtcagcccggacctcccggtgaccagggt
cctcctggaattccagggcagccaggattggcaggtgaaattggagagaaaggtcaaaaa
ggagagagttgccttatctgtgatacagcaggttatcggggccctcctgggccacaggga
cccccaggagaaataggtttcccagggcagccaggggccaagggcgacagaggtttgcct
ggcagagacggtcttgcgggagtgcctgggcctcaaggtacaccaggtctgataggccag
ccaggagccaagggggagcctggtgagatttatttcgacctgcggctcaaaggtgacaaa
ggagacccaggctttccaggacagcctggtgtgccagggagagcgggttctcctggaaga
gatggccatccgggtcttcctggccccaagggctcgccgggttccgtgggattgaaagga
gagcgtggcccccctggaggggttggatttccaggcagtcgtggtgacaccggcccccct
gggcccccaggatatggtcctgctggtcccattggtgacaaaggagaagcaggctttcct
ggaggtcctgggtccccaggcctgccaggtccaaagggtgaagcaggcaaagttgttcct
ttaccaggaccccctggcgcagaaggactgccaggctccccaggattcccaggtccccaa
ggagaccgaggctttcctggaaccccaggaaggccaggcctgccaggagagaagggcacc
atgggccagccggggattggatttccagggccccccggccccaaaggtgttgacggctta
cctggagacatggggcctccggggactccaggtcgcccgggatttaatggcttacctggg
aacccaggtgtgcagggccagaagggagagcctggagtgggtctaccgggactcaaaggt
ttgccaggtattcccggcattcctggcgcgcccggggagaagggaagtgttggagtacca
ggtgttcccggagaacgtggagcgatcggcccccctgggcttcagggggtcagaggtgac
ccaggacctcctggattgccaggccccatggggtctccaggagttccaggaataggcccc
ccgggagcgaggggcccccctggcggacagggaccagcagggttggcaggccctcctgga
ataaaaggcgagaagggtttccctggattccctggactggacatgcctggccctaaagga
gataaaggggctcaaggacttcccggcataacagggcagtcggggctccctggccttcct
ggacagcaggggactccgggggttcctgggtttccaggttccaagggagaaatgggtgtc
atggggacccctgggcagccgggctcaccaggaccagtgggctctccaggattaccgggt
gaaaaaggggaccatggctttccaggctcctcgggacccaggggagaccccggcttgaaa
ggcgataagggtgatgctggtctccccggcaagcctggctccatggataaagtggacatg
gaaaacatgaagggcgagaagggagaccagggagagaaaggacaaattggaccaattggt
gagaaaggatcgcgaggagaccctgggagcccaggagtgcctggaaaggatgggcaggcg
ggacagcccgggcagccaggacctaaaggtgatccaggcataagtggaatcccaggctct
ccgggacttccaggaccaaaaggatctgttggtggcatgggcttgccaggaacacctgga
gagaaaggcgtgcctggcatccctggcccacaaggtgcccctggcttacctggagaaaaa
ggtgcaaaaggagagaaagggcaggcaggcccacctggcataggcatccccgggctgcct
ggtgtcaagggggatcaagggatagcgggtttcccaggaagccctggagagaagggagaa
aaaggaagcattgggatcccaggagtgccggggtccccaggccttaaagggtctcctgga
agtgttggctatccaggaagccctgggctgcctggagaaaaaggtgacaaaggcctccca
ggattggatggcatccccggtgtcaaaggagaagcaggtcttcctgggacgcctggcccc
acaggcccagctggccagaaaggggaaccaggcagtgatggaatcccagggtcagcagga
gagaagggtgaaccaggtcttccaggaagaggattcccaggctttccaggggccaaagga
gacaaaggttcaaagggtgaggtgggtttcccaggattagctgggagcccaggaattcct
ggagccaaaggagagcaaggattcatgggtcctccggggccccagggacagccagggtta
ccaggatccccaggccacgccatggaggggcccaaaggagaccgtggacctcagggccag
cctggcctgccaggacttccgggacccatggggcctccagggcttcctgggattgatgga
ataaaaggtgacaaaggacacccaggctggccaggagcacccggtgtcccagggcctaag
ggagaccctggattccagggcatgcctggtatcggtggctctccaggaatcacaggttct
aagggcgatatgggacctccaggcattcaaggctttcaaggtgcaaaagggcttcctggc
ctccagggaattaaaggtgatcaaggagaccagggtgtcccaggagctaaaggtctgccg
ggtcctcctggccccccaggtccttatgacattatcaaaggggagcccggactccctggt
ccggagggccccccagggctgaaaggacttcagggacccccaggcccgaaaggccagcaa
ggtgtgacaggactggcgggaatacctggacctcccggtattcctgggtttgacggtgcc
cctggccagaaaggagagatgggacctgccgggccgactggtccaagaggatttccaggt
ccaccaggccccgacgggttgccaggatccatggggcccccaggcaccccatctgttgat
cacggcttccttgtgaccagacacagtcaaacaatagatgacccacagtgtccttcaggg
accaaaattctttaccatgggtactctctgctctacgtgcaaggcaatgaacgggcccat
ggccaggacttgggcacggccggcagctgtctgcgcaagttcagcaccatgcccttcctg
ttctgcaacatcaacaacgtgtgcaacttcgcgtcacggaacgactactcgtactggctg
tccactcctgagcccatgcccatgtcaatggcacccatcacgggggacaacataagaccg
tttattagtaggtgtgctgtgtgtgaggcgcccgccatggtgatggccgtgcacagtcag
accattcagatccctccgtgccccagcgggtggtcctcgctgtggatcggctactctttt
gtgatgcacaccagcgcaggtgcagaaggctctggccaggccctggcatcccctggctcc
tgtctggaggagtttagaagtgcgccattcatcgagtgtcacggccgtgggacctgtaat
tactacgcaaacgcttacagcttttggctcgccaccatagagagaagcgagatgttcaag
aagcctacgccgtccaccttgaaggcaggggagctgcgcacgcacgtcagccgttgccaa
gtctgtatgcgaagaacataa
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