Struthio camelus australis (South African ostrich): 104144781
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Entry
104144781 CDS
T08512
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
scam
Struthio camelus australis (South African ostrich)
Pathway
scam03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104144781 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scam03041
]
104144781 (DDX42)
Enzymes [BR:
scam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104144781 (DDX42)
Spliceosome [BR:
scam03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104144781 (DDX42)
Complex B
104144781 (DDX42)
Complex C
U2 SnRNP specific factors
104144781 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
104144781
NCBI-ProteinID:
XP_009674257
Ensembl:
ENSSCUG00000009431
LinkDB
All DBs
Position
Unknown
AA seq
953 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQVQKSKFKGGKGKKLNIGGGGLGYRER
PGLGSESSDRGNNSSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQKTG
SSAAGASGWTSAGSLNSVPTSSAQQSAVNPDSPIAAAAAAKGVPGFTSTGNLSSVPTFPS
VGIQGFNSTNASTNNREGIGCSSTGVAGVGGGGVGGGGVGGGSVGGVGGSSGGVRERYND
NRNNRHNDAQRRGEGGGRYNDVQRHGEGGGRHTDGFRHGDSRHGDSHRHGESRHPLDGSS
GNRNNGDSRNSSEGRNNENRNGENRKDGNSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttggttttggtggatttgcc
ataacacctggaaagaaagaggaacctaagctctctcaacagtctcacagtgcttttgga
acagctggttcttctgctgcatttgcgaaatcaggacctccccagctgccttctttctat
aaaattgggtcaaagcgagccaattttgatgaagagaatgcgtactttgaggatgaagag
gaagattccagcaacgtcgacctgccatacattcccgcagagaattcccccactcgccag
cagtttcattccaaatcggcagattctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagacttgaagataaagacaaggaa
aaaaagaatgtgaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggtgtggtacaagaagaggaagaggataac
cttgagtatgacagtgatgggaatccaattgcaccgtccaaaaaaatcatcgatcctctt
ccacctattgaccattcggagattgaatatccaccatttgagaaaaatttctatgatgag
catgaagaaatcaccagtctcaccccacagcaagtggtagaattacgtcataagctaaat
ctccgggtctctggtgctgctcctccaaggcctggcagtagttttgctcattttggattc
gatgagcaacttatgcatcaaattaggaaatcggagtatacccagcccacacctatacag
tgtcagggtgttccagttgcgctgagtggcagagatatgattggaatagctaagactgga
agtgggaaaacagcagccttcatctggccaatgttgattcacatcatggatcaaaaggag
cttgaaccaggggatggtcccattgctgtgatcgtgtgtccaaccagagagctttgccaa
cagatccattctgaatgcaagcgctttggtaaggcatataatctgcgctccgtagctgtg
tatggaggaggaagcatgtgggagcaagccaaagctctccaggagggggcagagatagtt
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacaaaccttcaaaga
gtcacttaccttgtgtttgacgaagcagacagaatgtttgacatgggttttgaatatcaa
gtcagatcaatcgcaagccatgtacgtcctgatagacagaccctcttgttcagtgccact
ttccgtaagaagattgagaaattggcccgagatattctgatcgacccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaattgtggagatttttccttct
ggccctagcaaatggaactggctgactcgacgcctcgtggagttcacatcatctgggagt
gttctcctgttcgtcaccaagaaggcaaacgcggaagagctggccaataacctcaagcag
gaggatcataatctagggctgcttcatggtgacatggatcagagcgagaggaataaagtc
atctcagaatttaagaaaaaggggatcccgatactggtagcaactgatgtggctgctcgt
gggttggacattccttccattaagaccgtgatcaattacgatgtggcacgggacatagat
acgcacacccacagaattggtcgtactggcagagcaggggagaagggagtagcctacact
ctactgactcctaaggacagtaactttgctggtgatcttgtcagaaatttggaaggcgct
aatcaacatgtttccaaagagctgttggatcttgcaatgcaggtacaaaaaagtaaattc
aaaggaggaaaaggcaagaagctgaatattgggggtggtggccttggataccgtgaacgt
cccggtctgggatcagaaagttctgaccgtggaaacaacagcagtgtaatgagtaactat
gaggcatacaagccgtccactggggcaatgggagacagacttacagcaatgaaagcagct
tttcagtcccaatataagagccactttgttgctgcaagccttaacaatcaaaagactggt
agctctgctgctggtgctagtggctggaccagcgctgggagcttgaattcagtaccaacg
agttcagcacagcaaagtgctgtaaatcctgacagcccaattgcagccgctgcagcagca
aagggtgttccaggtttcaccagcaccgggaatctgagtagcgttcccacctttccaagc
gtcggaatacagggcttcaacagcacaaatgccagcaccaacaatcgagaaggcatcggt
tgcagcagcactggcgttgctggtgttggtggcggcggtgttggtggcggcggtgttggt
ggtggcagcgttggtggcgttggtggcagcagtggtggtgtcagagaacgatacaacgac
aaccggaataatcgccacaatgatgctcagcgccgtggagagggtggcggtcgctacaat
gatgttcagcgccacggagagggaggcggtcgccatactgatggtttccgccatggagac
agccgacatggggacagccatcgccatggtgaaagccggcacccccttgatggaagcagt
ggcaatcgcaataatggtgatagcaggaatagcagtgaaggtaggaacaacgagaacagg
aatggtgagaacaggaaggatggcaatagccgagacaacaagacagatggttttgctgtc
cctgagcccccaaaacgcaagaagagccgatgggacagttaa
DBGET
integrated database retrieval system
