Streptomyces scabiei: SCAB_17401
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Entry
SCAB_17401 CDS
T01187
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scb
Streptomyces scabiei
Pathway
scb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SCAB_17401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scb03400
]
SCAB_17401
Enzymes [BR:
scb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCAB_17401
DNA repair and recombination proteins [BR:
scb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SCAB_17401
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CBG68871
UniProt:
C9ZET8
LinkDB
All DBs
Position
complement(1958178..1959167)
Genome browser
AA seq
329 aa
AA seq
DB search
MANTHRMRVGRRTVEIHRPDKVLFPGSGDSDGDGNRGDGDGDRGHGNRGDGGGKEYTKAD
LVAYHRAVAPFMLPHLRGRPLMLERHPDGIDGPMFMQKNTPGHYPDWIERVEVTKEGGTV
VHPVCEDAATLVYLADQACLTLHRWLSRTGDVHRPDRLVVDLDPAVDDFATVRDAAVLVR
ELLDELRLPSVPMTTGSRGVHVVVPLNGRADFDEVRAFAGEIAGTLVRAHPGRLTTEARK
KDRGDRLYLDIQRNAYAQTAVAPYTVRALPGAPVAAPLTWEQLADPAVDARRWTLADALD
QARTDPWAGAMSRGRALGPARRRLAALHG
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacacccaccggatgcgggtcggccgccggaccgtcgagatccaccggccggac
aaggtgctgttccccggaagcggagacagcgacggcgacggcaaccgtggtgacggcgac
ggcgaccgtggtcacggcaaccgtggcgacggcggcggcaaggaatacaccaaggccgat
ctcgtcgcctaccaccgggccgtcgcccccttcatgctgccgcacctgcgcgggcgcccg
ctgatgctggaacggcaccccgacggcatcgacggacccatgttcatgcagaagaacacc
cccgggcactacccggactggatcgagcgcgtcgaggtcaccaaggagggcggcaccgtc
gtccaccccgtgtgcgaggacgcggccaccctcgtctacctggccgaccaggcctgcctc
accctgcaccgctggctctcccgcaccggcgacgtccaccggcccgatcggctggtcgtc
gacctcgacccggcggtcgacgacttcgccacggtccgggacgccgcggtcctcgtacgg
gagctgttggacgagctgaggctgccgtcggtgccgatgaccaccggttccaggggggtc
cacgtcgtcgtgccgctgaacggccgcgcggacttcgacgaggtccgcgccttcgccggg
gagatcgccgggaccctggtccgcgcccatcccgggcggctgacgaccgaggcccgcaag
aaggaccgcggcgaccggctctacctcgacatccagcgcaacgcctacgcccagaccgcc
gtcgccccctacaccgtgcgggccctccccggcgcgcccgtggccgcgcccctcacctgg
gaacagctcgccgaccccgccgtcgacgcccgccgctggaccctcgcggacgccctcgac
caggcccgcaccgacccctgggccggggcgatgagcaggggacgggcgctggggccggcc
cggcggaggctcgcggcgctgcacggctga
DBGET
integrated database retrieval system
