Streptomyces scabiei: SCAB_29521
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Entry
SCAB_29521 CDS
T01187
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scb
Streptomyces scabiei
Pathway
scb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SCAB_29521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scb03400
]
SCAB_29521
Enzymes [BR:
scb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SCAB_29521
DNA repair and recombination proteins [BR:
scb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SCAB_29521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
CBG70056
UniProt:
C9ZA62
LinkDB
All DBs
Position
3363102..3363983
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AA seq
293 aa
AA seq
DB search
MTPITEVEGRRIVLSHLEKVLHPATGFTKGELLHYYATTADALLPHLRDRPVSFLRYPDG
PGGQVFFTKNVPPGTPDWVTTAEVRRMEGPARMVLVQDLASLMWASNQVAEFHTPQWTVG
SGEEADRLVLDLDPGEPATIVECCEVARWLRERLAEDGIEAYAKTSGSKGLHLLAAVRGA
TSERVSEYARELAVEAEKALPRLVVHRMNRSLRPGKVFVDWSQNAARKTTAAPYTLRARP
EPTVSAPVTWAEVEECGSPAHLVFRAPDIAPRLRDHGDLLAPLLDAEAAHALP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgacaccgatcaccgaggtggagggccgccggatcgtcctctcccatctggagaaggtc
ctccacccggcgacgggtttcaccaagggtgagctgctgcactactacgccacgaccgcg
gacgccctgctgccgcatctgcgcgaccgcccggtctccttcctccgttacccggacggt
ccgggcggacaggtcttcttcaccaagaacgtgccgccgggcactccggactgggtcacc
accgccgaggtgcggcggatggagggaccggcccggatggtgctggtgcaggacctggcg
agcctgatgtgggcctcgaaccaggtcgccgagttccacaccccgcagtggaccgtcggc
tccggcgaggaggccgaccggctcgtcctcgacctggacccgggggaacccgcgacgatc
gtcgagtgctgcgaggtcgcccgctggctgcgggagcggctcgcggaggacgggatcgag
gcgtacgcgaagacgtccgggtcgaaggggctgcatctgctggcggcggtgcgcggggcg
acctcggagcgggtgtcggagtacgccagggaactcgccgtcgaggccgagaaggcgctg
ccccgcctggtcgtgcaccggatgaaccgcagtctgcgccccggcaaggtgttcgtggac
tggagtcagaacgccgcccgcaagaccacggcggcgccctacacgctgcgcgcccgcccc
gagccgaccgtctccgcgccggtgacgtgggccgaggtggaggagtgcggctcccccgcg
cacctggtgttccgcgccccggacatcgccccccgcctccgggatcacggcgatctgctg
gcgccgctcctcgacgcggaggccgcgcacgcgctgccgtga
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