KEGG   Streptomyces scabiei: SCAB_29521Help
Entry
SCAB_29521        CDS       T01187                                 

Definition
(GenBank) conserved hypothetical protein
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
scb  Streptomyces scabiei
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:scb00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    SCAB_29521
Enzymes [BR:scb01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SCAB_29521
DNA repair and recombination proteins [BR:scb03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     SCAB_29521
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
3363102..3363983
Genome map
AA seq 293 aa AA seqDB search
MTPITEVEGRRIVLSHLEKVLHPATGFTKGELLHYYATTADALLPHLRDRPVSFLRYPDG
PGGQVFFTKNVPPGTPDWVTTAEVRRMEGPARMVLVQDLASLMWASNQVAEFHTPQWTVG
SGEEADRLVLDLDPGEPATIVECCEVARWLRERLAEDGIEAYAKTSGSKGLHLLAAVRGA
TSERVSEYARELAVEAEKALPRLVVHRMNRSLRPGKVFVDWSQNAARKTTAAPYTLRARP
EPTVSAPVTWAEVEECGSPAHLVFRAPDIAPRLRDHGDLLAPLLDAEAAHALP
NT seq 882 nt NT seq  +upstreamnt  +downstreamnt
atgacaccgatcaccgaggtggagggccgccggatcgtcctctcccatctggagaaggtc
ctccacccggcgacgggtttcaccaagggtgagctgctgcactactacgccacgaccgcg
gacgccctgctgccgcatctgcgcgaccgcccggtctccttcctccgttacccggacggt
ccgggcggacaggtcttcttcaccaagaacgtgccgccgggcactccggactgggtcacc
accgccgaggtgcggcggatggagggaccggcccggatggtgctggtgcaggacctggcg
agcctgatgtgggcctcgaaccaggtcgccgagttccacaccccgcagtggaccgtcggc
tccggcgaggaggccgaccggctcgtcctcgacctggacccgggggaacccgcgacgatc
gtcgagtgctgcgaggtcgcccgctggctgcgggagcggctcgcggaggacgggatcgag
gcgtacgcgaagacgtccgggtcgaaggggctgcatctgctggcggcggtgcgcggggcg
acctcggagcgggtgtcggagtacgccagggaactcgccgtcgaggccgagaaggcgctg
ccccgcctggtcgtgcaccggatgaaccgcagtctgcgccccggcaaggtgttcgtggac
tggagtcagaacgccgcccgcaagaccacggcggcgccctacacgctgcgcgcccgcccc
gagccgaccgtctccgcgccggtgacgtgggccgaggtggaggagtgcggctcccccgcg
cacctggtgttccgcgccccggacatcgccccccgcctccgggatcacggcgatctgctg
gcgccgctcctcgacgcggaggccgcgcacgcgctgccgtga

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