Gracilinema caldarium: Spica_0928
Help
Entry
Spica_0928 CDS
T01573
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
scd
Gracilinema caldarium
Pathway
scd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Spica_0928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scd03021
]
Spica_0928
Transcription machinery [BR:
scd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Spica_0928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r3
HTH_25
At2g31720-like
Motif
Other DBs
NCBI-ProteinID:
AEJ19078
UniProt:
F8F2G3
LinkDB
All DBs
Position
1019740..1020624
Genome browser
AA seq
294 aa
AA seq
DB search
MAETKKIVKSKSVKKETMNDENVLSIYLKEINKIPLLTREEEDAIARAAAKGDKAARDKL
AAANLRFVVNVAKKYQNQGLSLSDLISEGNIGLLNAIERYDVDKGYHFISYAVWWIRQAI
LKAICEKSRMIRLPLNRANELVQIEKARKVLQGGATSDAEINEVARLLDMEPSHVTDLIN
ISRELVSLESPVFTEKDSSILGDFLEDTTYKAPEAAAIESALREDIDAVLNTLTEKEAEI
IRYRFGLNGHVPMSLKEIGDKYHLTKERIRQIEKKALKRLQHPARKQYLESYVA
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaacaaaaaagatcgtaaaatcaaaatcggtaaaaaaagaaacgatgaacgat
gaaaatgttctttctatatatcttaaagaaatcaataagattccgctcttaacaagagaa
gaggaagatgcaatagcccgggctgcagccaagggtgataaggcagcacgggataaactt
gctgcagctaatctgcgattcgttgtgaatgtggcaaaaaagtaccaaaaccaaggatta
tcgctctcggacctcatcagcgaaggtaatattgggctcctgaatgctattgaacggtac
gatgtagataaggggtatcattttatttcctatgcggtctggtggattcggcaggctata
ttaaaggctatctgtgaaaaatcccgtatgatccgtctgcccttgaatcgggctaatgaa
ctggtacagattgaaaaggcccgtaaggtcttgcagggtggtgctaccagcgatgcagag
atcaatgaagtagcccgtctccttgatatggaaccttcccatgtgactgatcttatcaat
attagccgtgaactggtttctctggaaagtcctgtatttacagaaaaggattcttccatt
ctaggggattttttagaagataccacctacaaagcccccgaagctgcggctattgaatca
gcgctgcgtgaagacattgatgcagtgctcaatactttgacagagaaagaagctgaaatt
atccggtaccgctttggtcttaatggccatgtacctatgtccttaaaagaaataggggat
aagtaccatttgaccaaggagcggatccggcaaattgaaaaaaaagcgcttaaacggctt
cagcatcctgcccgtaagcagtatcttgaaagctatgtagcctaa
DBGET
integrated database retrieval system
