Gracilinema caldarium: Spica_1027
Help
Entry
Spica_1027 CDS
T01573
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD subfamily
KO
K03086
RNA polymerase primary sigma factor
Organism
scd
Gracilinema caldarium
Pathway
scd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
scd00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Spica_1027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scd03021
]
Spica_1027
Transcription machinery [BR:
scd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Spica_1027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
PHA_synth_III_E
Motif
Other DBs
NCBI-ProteinID:
AEJ19176
UniProt:
F8EXE9
LinkDB
All DBs
Position
1131744..1132784
Genome browser
AA seq
346 aa
AA seq
DB search
MYAEMESVKGQPMNQVRPEPAKKKSKKKALNQFSKPKKTSKTLKEADPLAMYLKQISRFP
LLSGDEEQAIGEKIVHLREEIAHLDERYHENLQDPEYKKERVQLDNALMYYKNKMINSNL
RLVVSIAKNYQHRGLSLLDLIDEGNIGLIEAVERFDYTRKCRFSTYGTWWIRQAIIKSLA
DKGRVIRIPIHMLNTIKKCYFIAKQLTQDLGRDPSDEELSEYLGVPVSKVKEIVKLSQET
TSLDTTVDDDNVTRLSDLIKDETLEDPFDMVFAMTLQDTLDSVLSHLSEREVKIIQLRFG
LTGEGPLTLEETGKLLGITRERVRQIQEKAIFKLRNLKQLNDFTAE
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgtatgctgagatggaatctgtaaaaggtcaacctatgaaccaagttcgccctgaacca
gcaaaaaagaaatcaaagaaaaaagcccttaatcagttttccaaacctaaaaagacgagt
aagacattaaaagaagcggatcctctggcgatgtatcttaagcagatttcccgatttcct
ttactcagtggagatgaagagcaggcaattggtgaaaaaatagttcaccttcgggaagaa
atcgctcatcttgatgaacggtatcatgaaaatttacaggatccagagtataaaaaagaa
cgggttcaattagataatgctcttatgtattataaaaacaagatgattaactcaaatctc
agactagttgtatctattgcaaaaaactatcagcatagaggactttcgctgcttgatcta
attgatgaaggaaacatcggtcttattgaggccgtggaacgttttgattatacccgcaaa
tgccgattctctacttatggtacctggtggattaggcaggccatcataaaaagccttgct
gataaggggcgagtcattcgtatccctatccacatgctcaatacaattaaaaagtgttat
tttattgcaaaacaactaacccaagatcttgggcgtgaccctagtgatgaggagctttca
gaatatctgggcgttccggtatctaaggttaaagaaattgtcaaactctcccaagagaca
accagccttgataccacggttgatgatgataatgtaacccgtctttcagatcttataaag
gatgagaccctggaagatccctttgatatggtgtttgctatgaccttacaggatacgctc
gatagtgttctatctcatctttctgaacgggaagttaaaattatccaacttcgttttggc
ttaaccggagaaggacctctgactttggaagaaacgggaaagctgttgggtattacccgt
gaacgggtccgccaaattcaagaaaaggctatttttaaattgaggaatctgaaacagctc
aatgattttactgctgagtag
DBGET
integrated database retrieval system
