Saccharomyces cerevisiae (budding yeast): YDL164C
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Entry
YDL164C CDS
T00005
Symbol
CDC9, MMS8
Name
(RefSeq) DNA ligase (ATP) CDC9
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
sce
Saccharomyces cerevisiae (budding yeast)
Pathway
sce03030
DNA replication
sce03410
Base excision repair
sce03420
Nucleotide excision repair
sce03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sce00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
YDL164C (CDC9)
03410 Base excision repair
YDL164C (CDC9)
03420 Nucleotide excision repair
YDL164C (CDC9)
03430 Mismatch repair
YDL164C (CDC9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sce03032
]
YDL164C (CDC9)
03400 DNA repair and recombination proteins [BR:
sce03400
]
YDL164C (CDC9)
Enzymes [BR:
sce01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
YDL164C (CDC9)
6.5.1.6 DNA ligase (ATP or NAD+)
YDL164C (CDC9)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
YDL164C (CDC9)
DNA replication proteins [BR:
sce03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
YDL164C (CDC9)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
YDL164C (CDC9)
DNA repair and recombination proteins [BR:
sce03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
YDL164C (CDC9)
NER (nucleotide excision repair)
Other NER factors
YDL164C (CDC9)
MMR (mismatch excision repair)
Other MMR factors
YDL164C (CDC9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
851391
NCBI-ProteinID:
NP_010117
SGD:
S000002323
UniProt:
P04819
Structure
PDB
LinkDB
All DBs
Position
IV:complement(164987..167254)
Genome browser
AA seq
755 aa
AA seq
DB search
MRRLLTGCLLSSARPLKSRLPLLMSSSLPSSAGKKPKQATLARFFTSMKNKPTEGTPSPK
KSSKHMLEDRMDNVSGEEEYATKKLKQTAVTHTVAAPSSMGSNFSSIPSSAPSSGVADSP
QQSQRLVGEVEDALSSNNNDHYSSNIPYSEVCEVFNKIEAISSRLEIIRICSDFFIKIMK
QSSKNLIPTTYLFINRLGPDYEAGLELGLGENLLMKTISETCGKSMSQIKLKYKDIGDLG
EIAMGARNVQPTMFKPKPLTVGEVFKNLRAIAKTQGKDSQLKKMKLIKRMLTACKGIEAK
FLIRSLESKLRIGLAEKTVLISLSKALLLHDENREDSPDKDVPMDVLESAQQKIRDAFCQ
VPNYEIVINSCLEHGIMNLDKYCTLRPGIPLKPMLAKPTKAINEVLDRFQGETFTSEYKY
DGERAQVHLLNDGTMRIYSRNGENMTERYPEINITDFIQDLDTTKNLILDCEAVAWDKDQ
GKILPFQVLSTRKRKDVELNDVKVKVCLFAFDILCYNDERLINKSLKERREYLTKVTKVV
PGEFQYATQITTNNLDELQKFLDESVNHSCEGLMVKMLEGPESHYEPSKRSRNWLKLKKD
YLEGVGDSLDLCVLGAYYGRGKRTGTYGGFLLGCYNQDTGEFETCCKIGTGFSDEMLQLL
HDRLTPTIIDGPKATFVFDSSAEPDVWFEPTTLFEVLTADLSLSPIYKAGSATFDKGVSL
RFPRFLRIREDKGVEDATSSDQIVELYENQSHMQN
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagattactgaccggttgccttctttcatctgcacgtcccttgaaatcaagattg
ccattattgatgtcatcctcattaccttcctctgccggtaagaagcctaaacaagccact
ttggctagattcttcacttccatgaaaaataagccaacagaaggtactccttctcccaaa
aaatcatccaaacatatgctggaagatagaatggataatgttagtggggaagaggaatac
gcgaccaagaaattgaaacagacggctgttacacatactgtagcagctccaagctccatg
ggtagcaatttttcttctataccatcatccgctccctcttccggtgttgctgattcaccg
caacaatctcagaggttggtaggtgaagttgaagacgccttgagctcaaataataatgat
cactattcgtctaatatcccctattctgaagtttgtgaggtttttaacaagattgaggcc
atatcttcccgtttagagattataagaatctgttctgatttctttattaagataatgaag
caatcgtctaagaacttaatacctacaacataccttttcatcaatagattgggccctgac
tacgaagcaggcttggaattaggccttggagaaaatcttcttatgaaaaccataagcgaa
acttgcgggaaatccatgagccaaattaaacttaaatacaaggatattggggatttgggt
gaaatagcaatgggtgcgagaaatgtccaacccactatgtttaagcccaaacccttgacc
gtgggtgaggtcttcaaaaatcttagagctattgctaagactcagggcaaagattcacaa
ttaaaaaagatgaagctgatcaagagaatgcttactgcttgcaaaggtatagaggctaag
tttttgattagatccctagagtcaaaattgagaatcggtcttgctgaaaagactgtctta
atatccctatcgaaggctcttttgctccatgatgaaaatagggaggactctccagacaaa
gatgtccccatggatgtgttagaaagtgctcaacaaaagataagagacgcattttgtcaa
gtacccaactatgaaattgttataaactcatgcctggaacacggtattatgaatttagat
aaatattgtactctaagaccaggaattccattgaaacccatgttagccaagcctaccaag
gcaattaatgaagtattggatagatttcaaggcgaaacttttacgtcagaatacaaatac
gatggtgaaagggctcaggtgcatttactaaatgatggtacaatgaggatttattccaga
aatggcgagaatatgactgagagatatccagaaattaacataacggattttatccaggat
ttggatactaccaaaaatttaattctagactgtgaggctgttgcttgggacaaagatcag
gggaaaattttgcctttccaggtcttaagtacaaggaaacgtaaagacgtggagctgaat
gatgttaaagttaaagtctgtctctttgcatttgatatactttgctacaacgatgaaagg
ctgattaataagtcactaaaggaaagaagagaatacttgacgaaggttacaaaagttgtc
ccgggagaattccaatacgcgactcagataacaacaaataaccttgatgaacttcaaaaa
ttccttgatgagtccgttaatcactcatgcgaaggtttgatggtcaaaatgttggagggc
cctgaatcccattatgaaccaagtaaaaggtcaagaaactggttgaaattaaaaaaagat
tacttggagggggttggagattcattggatctctgcgtgttgggggcatattatggtaga
ggaaaaagaactggtacgtacggtgggttccttctaggatgttacaaccaagacacagga
gaatttgaaacttgttgcaagatagggacaggattttcggacgaaatgttgcagcttttg
cacgacaggttgaccccgacgatcattgatggaccaaaagccacgtttgttttcgattcg
agtgctgagccagatgtatggttcgaacctacgactttgtttgaagttttgactgcagac
ctttccctatcgcctatttataaagcaggtagtgcaacttttgataaaggcgtatcctta
agatttccaagatttttgcgtataagagaagacaagggcgtagaagatgcaacctcttct
gaccagatcgtcgaattgtatgaaaaccaatcccacatgcaaaattag
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