Siniperca chuatsi (mandarin fish): 122873721
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Entry
122873721 CDS
T08948
Symbol
ccdc88aa
Name
(RefSeq) girdin isoform X1
KO
K25392
girdin
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
schu03037
]
122873721 (ccdc88aa)
Cilium and associated proteins [BR:
schu03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
122873721 (ccdc88aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HOOK_N
Motif
Other DBs
NCBI-GeneID:
122873721
NCBI-ProteinID:
XP_044046745
LinkDB
All DBs
Position
LG3:complement(24868040..24887961)
Genome browser
AA seq
1826 aa
AA seq
DB search
MESGVFLPCLDQFMLSPLVTWVKTFVPNDGGMHLDFSELLDGVFLNDIMTQINPSAAPQG
AKKVSRDPSQRIQNLNFLAQQIKTYYLDNLRQLIMIPLPNVLLLGRTPYCEQSLEEMKKL
LLLLLGCAVQCEKKEEYIERIQTLDFDTKAAIAAHIQELTHSQENVLDLQWLESSEVHLD
ELEAVARNMATHLRHLLDQRDTHLETIAELMQEKEGVVSLLSSPSSPQSASYSPSMQQQQ
AGTQQHLAVELADSKAKIRRLRQELEEKNEQMLDCRHELENIEAELKRIQQENSQLLVDA
RAARTYRDELDALRERAIKADKLESEVGRYREQLHKMEFYKAKVEELKEDNRVLQETKEV
LEDQLEGWRARSDKIHQLEKHSLLLNARVHDMEQERETDRRRIEELQEENLALCLAQRRS
MEESQHLGWELEQLSKTTENSQGQQTLSEEVSERTRSRMLKLEKENQSLLRTIEELRATS
VNNSTHPKHSHHLECDHVCQVVCSTNNCTSSTDEPTELQTSCSKMENRTRVFPLRTVTQQ
MLNGDSNCHQPLHAEEQEEVQSKIFLTDNPDLHIQEKGQLEDGDGGDHFKELMSDLEVLE
NSHNRLHCFVGSGDHSPGSKSHSPCHDSIFTGLPTRSSYASKHTQRLEAKCRALDTVNQH
LQTSLDNTDRKVQRLEAEVQELEAENQSLQATLEELRISARRLEQLETEKQSLEQETTVL
EREKRQLEKENRRLRQQAEIQEANLDSSNVCMASLEREMRFLVKEMEGLRETAERVKGLE
GDNRELTKQAAIDQRTLATLREELVSEKLKTQQRDNELERLAHELEMKVLNQESTQQAEP
EEPDNSRFKMLESELESSLKKSLQIKEDKMAALEARLQESSTLNQQLRQELKTVKLSYEA
LQQKREEEWTASSSTPPRETGRAMSEWLRESQEATKELLKLKDHLIEVERNNATLEAERQ
AMQVQLKQLESQSDSQQAQILALQRQAASLQENNTALQTHNANLQVEKSTLNSQSASLMA
QNAQLQQQQSRTESERDSATQGREELRGVHEQLLRDHERLAALHERQAMEYEALMGKHGC
LKNTHRTLELEHRTLQDRYNSMLQQRTKLEDLEKALKEEQMRMALEKEQHRTTADECCRL
RDEKDWLNQTYRQLLNDNELLTADHKLLKSQLNEAKLEHTWLEADFSKLKKEFQQLDITS
TKLTNQCELLSQLKGNLEEENRHLLNQIETLMLQNRTLLEQTMESKDLFHVEERQYIDKL
NDLRRQKEKLEEKIMDQYKFYEPSPPRRRGNWITLKLKKLIKSSSREHGPDRPPTPTHSG
VTEPHLSCHDNSSFISSDGSGGSAFTSIGDAISPQRNSTLSSLAYPSALFQEEQWADGSE
RLEGSEADVEEDRKNALTSSLTTSILSILHLNHPTTLLSSGHVTTTTTDTTNTVPDVSEL
WVTDKDSNESTVPSGSEDNDELQNHGLNGVQSRAQSESSGEFSLSLENEPWSNGSSPVQL
PPSRRSSSSYQPPSDASTPQHTQKQLQHKDKASTLPITNSQNSDIQSIPKRKDPGLSQDF
WLTRGTKSIRRGSRGKVTRRSSDSGGTVKMNPGLNGMNSNLNCSKAETTRASACSPITVL
YVQGKSSSMSGCLNCFSTPLGKEGRLKGSRSPRSLPRASSVISTAEGSSRRCSVNSECRV
TVKTDPLSVQVSEENNNQEETASQQQLEQDTNGETEPIPPVKPPRDPTVPTDHPKSPAQE
LPFGSSFTFKSVFSNTIFSDSVVKTTTSLDALGNNQTFLCLNASLAQNCPLESQESPPNT
PQTLLNMENTEHTAGLEEKDKPLTIA
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtggagtttttctgccctgtctggatcaattcatgctgagcccccttgtcact
tgggtgaagacatttgtgccaaatgatgggggcatgcacttggacttttctgaattactg
gatggagtctttttgaatgacataatgacacaaataaatccctcagctgcacctcagggt
gcaaaaaaagtgagcagggatccaagtcagaggatccagaacctgaacttccttgcccag
caaatcaagacgtattatctggataatctgagacagttaatcatgattcctttgccaaac
gtgttgctgcttggcaggactccttactgtgaacaaagtcttgaggaaatgaagaaactt
ttgctgctgctgttgggatgtgcagttcagtgtgagaaaaaagaggagtacattgagagg
atccagacacttgactttgacacgaaagctgccatagctgcacatattcaggagttgacc
cacagtcaggagaacgtgctggatctgcagtggttggaatccagtgaggtgcacctggat
gagctggaggctgtggcgaggaacatggccacgcacctgcgacatctgctggaccagagg
gacacccatctagagactatagcagagctaatgcaggaaaaggaaggcgtggttagcttg
ctcagtagcccctccagtccgcagtccgccagctactctcccagcatgcagcagcagcag
gcggggactcagcaacacctggcggtggagctggctgactctaaggccaagatcagacga
cttagacaagaactagaggagaagaatgagcagatgctggactgtagacatgagctggag
aacatagaggcagagctgaagaggatccagcaggagaattcccagctgctcgtagatgcc
cgcgcagcccgcacctaccgcgacgagctggacgccctgagagagagagccataaaggcg
gacaagctggagagtgaagtggggcgctacagggagcaactgcacaagatggagttctac
aaggccaaagtggaggagctaaaggaggataacagggtgctacaggagaccaaagaagtg
ttggaggatcagttagaaggctggagggcacgctcagataaaatccaccagctggagaag
cacagtctgctgctgaatgcccgggtccatgacatggaacaggagagggagacagatcgg
aggcgcattgaagagctgcaagaggagaatctggctctgtgtttagctcagaggaggagc
atggaggagtcccagcacttgggctgggagttagagcagctctccaagaccactgagaac
tctcagggtcagcagactctgagcgaggaggtgagtgagaggacccgcagtcggatgctg
aagctggagaaggagaaccaaagtctcttaaggactatagaggaactcagagccacctct
gtgaacaacagcacacatcccaaacatagccaccaccttgagtgtgatcatgtctgccag
gtggtctgtagcaccaacaactgtacctcatcaacagatgaacccacagagttgcaaacc
tcctgctcaaaaatggaaaaccgcactcgtgtattcccgctcagaacagtaacacagcag
atgctaaatggagattcaaactgccatcagccacttcacgcagaagagcaggaggaagtc
cagagtaagatcttcctcacagataatccagaccttcatattcaggagaaaggacagcta
gaggatggagatggtggagatcatttcaaagaactgatgtctgatctggaagtcttagaa
aacagtcacaacagactccattgttttgttggctcaggtgatcactcccctggctcgaag
agtcacagtccctgccatgacagcatcttcacaggtctgccaacacgttcctcctatgcc
agcaagcacacacagcggctggaggccaagtgcagggccctggacacagttaaccagcat
ctacagacttccctcgataacactgaccggaaagttcagcgcctggaggcagaggttcag
gagctggaggcagagaaccagagtctgcaggccactttagaggaacttcggatctctgca
cgacgtctggagcaactggaaacagagaagcaaagcctggagcaagaaaccacagtcctg
gagagggaaaagaggcagctagagaaagagaatcgacgactccgccagcaggctgaaatc
caggaagccaatttagacagcagcaatgtctgtatggccagcctggaaagggagatgcgt
tttctagtaaaggagatggaggggttaagggagactgctgagagggtcaaaggcctggag
ggagacaacagagaactgaccaagcaagctgctattgaccagaggaccctggccaccctc
agagaggagctggtgagcgagaagctgaagacccagcagagagacaatgaactggagagg
ctggcccatgagttggaaatgaaagtcctgaaccaggagagtacacagcaggctgaacca
gaggaaccagacaacagcaggttcaagatgctggagtcagagttggagtcgtctctgaaa
aaatctcttcagattaaagaggacaagatggcagctttggaggctcgtctgcaggaatcc
tccaccctgaaccagcagctgcgccaagagctcaagactgtgaagctgagctatgaggcc
ttgcaacagaagcgggaggaagagtggacagcatcaagttccacccctcccagagagacg
ggcagggcaatgagcgaatggctgcgggaaagccaggaggccaccaaggaactgctgaag
ctcaaagaccatctcattgaagtggagaggaataatgcgactctggaggcagagcgccag
gctatgcaggtccaactgaagcagctggagagtcagtctgacagccagcaggctcagatc
ctcgccctgcagaggcaggctgcctcactgcaggagaacaacacagccctgcagacacac
aacgctaacctgcaggtggagaaatccactctaaactcacagagtgcttccctcatggcc
cagaatgctcagctgcagcaacagcagtcaaggacagaaagcgagcgggacagcgccaca
cagggacgtgaagagctgcgtggtgttcacgagcagctattacgagatcacgagcggctg
gcagctctgcatgagcggcaggccatggagtatgaggccctgatgggcaagcatggctgt
ttgaaaaacacccatcgcacactggagctggagcatcgcacactgcaggacaggtacaat
agcatgttgcagcagcggaccaagctagaagacctggagaaagccctgaaggaggagcag
atgaggatggctctggagaaagaacagcacaggaccactgctgatgaatgttgcaggctc
cgtgacgagaaggactggctgaaccagacataccgtcagcttcttaacgacaacgagttg
ctgacagcagatcacaagctgctcaagagccagctgaatgaggccaagctggagcacacc
tggctggaggccgacttctccaagctcaagaaggagtttcagcagctggacatcacctcc
acaaagctcaccaaccagtgtgagttgctgagccagttgaagggcaacctggaggaagag
aatcgccacctgctcaaccagatcgagaccctgatgctgcagaatcgaaccttgttggag
cagactatggagagcaaggatctgtttcacgttgaagagcgacagtatattgacaagctt
aatgatttgaggaggcagaaggagaagctggaggaaaagataatggaccagtacaagttt
tatgagccatcgcctcctcgcagacgtggaaactggatcactctgaaacttaagaagttg
attaaatccagtagccgtgagcatgggcccgaccgcccacccacacccacacactctggc
gttactgagccacacctctcctgtcacgacaacagctccttcatcagctcagatggctct
ggaggctcagccttcacctcaataggtgatgccatctcaccccaacgtaacagcaccctg
agcagcttggcgtacccctctgccctgttccaggaggagcagtgggcagacggctcagag
cggctggaagggtcagaggctgatgtggaggaggacaggaagaacgcattgacctcatcc
cttaccacatccatcttgtccatcctccaccttaatcatcccaccactctactctcatct
gggcacgtcaccaccacaaccactgacaccaccaacactgttccagatgtttctgagctt
tgggtgacagacaaggattcaaatgagagcactgtgccatctggatctgaggacaatgac
gagctgcagaatcacgggctgaacggcgtccagagtcgagcccaaagtgagagcagcggt
gagttcagcctgagcctggaaaatgagccatggtcaaatggcagcagccctgtccagctg
cccccatcacgccgctcctcctcctcctaccagccacccagcgatgcctccaccccccaa
cacacacagaagcagctgcagcacaaggacaaagcctctaccttgcccatcaccaacagt
cagaattcagatatccagtctataccaaaacggaaagatcctggactctctcaggacttc
tggctcacaaggggtacaaagagcatcagaagggggtcaagagggaaagtgactcgtcgc
tcgtcagattcagggggaacagtaaaaatgaacccagggctcaatggaatgaattcaaat
ttgaactgtagcaaagctgaaactacccgagcctcagcttgttcacccatcacagtgctg
tatgttcagggtaagtcgtcctcaatgtctggctgcctcaactgcttctccacccctctg
gggaaagaggggcgactgaaagggtccaggtcacccagaagtctcccccgagccagcagt
gtcatttccacagcagaggggtcgtcccgacgctgcagtgtaaacagcgagtgcagggtg
acagtcaagactgacccgctctctgtccaggtttccgaagagaacaataatcaggaggaa
acagcgagtcagcaacaactggaacaagacaccaatggtgagactgagcccattcctcct
gtcaaacctcccagagacccaacagttcccacagatcaccccaaatcccctgcgcaggag
ttaccttttggctcctcattcactttcaaatctgtcttctcaaacacaatcttcagcgat
tctgtggtcaagaccacgactagcctggatgcccttggcaacaaccagaccttcctttgt
ctgaatgcatctctggcgcaaaactgtccacttgagagccaggagtctcctcctaacaca
ccacaaacactgctcaacatggaaaatacagaacacacagccgggctggaagagaaggac
aagccgctcacaattgcatga
DBGET
integrated database retrieval system
