Siniperca chuatsi (mandarin fish): 122875758
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Entry
122875758 CDS
T08948
Symbol
cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122875758 (cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122875758 (cnot6l)
Enzymes [BR:
schu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
122875758 (cnot6l)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122875758 (cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122875758 (cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
LRR_9
type_II_gspD_N0
Motif
Other DBs
NCBI-GeneID:
122875758
NCBI-ProteinID:
XP_044051170
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All DBs
Position
LG5:complement(3196866..3221263)
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AA seq
553 aa
AA seq
DB search
MPKEKYDPPDPRRCYTIMSAEEAANGKKSYWAELEISGRVRSLSTSLWTLTHLTALHIND
NNLTRIPPDIAKLPNLVYLNLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQEPDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDQMTP
TAVFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITNCDADIISLQEVETEQ
YYTLFLETLKERGYDGYFCPKSRAKLVSEQERKHVDGCAVFFKTEKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNKDMFSDGMKPLQERQLILVANAHMHWDPEY
SDVKLIQTMMFLSELKSIAERASGSVATSSPTSDPSSIPIVLCADLNSLPDSGVVEYLSN
GGVAENHKDFKELRYNECLTNFNCNGKNGNSDGSITHSFQLKSAYDRNLMPYTNYTYDFK
GVIDYIFFSKTHMSVLGLLGPLDSQWLIDNNITGCPHPHIPSDHFSLLAQLELQPPLPHP
LNPLNGLHLPVHR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatccccgcagatgttacaccatcatgtcagcc
gaggaggcggccaatgggaagaagtcttactgggccgagctcgagatatctgggcgggta
aggagcctgagcacctcgttatggacgctcacccacctgacggcactgcacatcaacgac
aacaacctgacccgcatcccaccggacatcgccaagctgcccaacctggtctacctgaac
ctatcatctaataagctccgcagcctgcccgccgaactgggcaacatggtctctctcagg
gaattgcttttaaacaacaatcttttacgagttctgccttatgaacttgggaggcttttc
cagttacaaaccctgggtctaaaaggaaaccctttgtcccaagacatcctcaatctgtac
caggagccggacggaaccagaaagcttttgaactacatgctcgacaatctagcagtgcac
ccagagcagctcccccaaagaccttggatcactctgaaagagcgagaccaaatgactccc
acagccgtgttcacggtcatgtgctacaacgtgctgtgtgacaagtacgccacgcgacag
ctgtacggctactgtccatcctgggccctcaactgggagtaccggaagaaaggcatcatg
gaggaaatcaccaactgtgacgctgacatcatcagcctgcaggaggtggagacggagcag
tactacactttgtttctggaaacgctaaaggagcgcggctacgatggctacttctgtcca
aagtctcgtgccaagctggtttctgaacaggagaggaaacacgtggacggctgcgctgtg
ttcttcaagaccgagaagtttactttggtccagaaacacactgtggagttcaaccaggtg
gccatggccaactctgagggctcagaggtcatgctgaacagagtgatgaccaaagacaac
atcggggtggccgtgctgctcgaggtcaacaaggacatgttctccgatggcatgaagcca
ctacaggagaggcagctgatcctggtggccaacgcccacatgcactgggaccccgagtac
tcggacgtcaagttgatccaaaccatgatgttcctgtcggagctgaagagcatcgctgag
agggcctcgggctccgtggcgaccagttcaccaacctccgacccatcctccatccccatc
gtcctgtgtgctgacctcaactcgctgcccgactccggtgtggtggaatacctgagcaac
ggaggagtggccgagaaccacaaggacttcaaggagctacgctacaatgaatgtctgacc
aacttcaactgcaacggcaagaacggcaattcagacggaagcatcacacacagcttccag
ctgaagagcgcctacgacagaaatctgatgccttacaccaactacacatatgactttaag
ggcgtgatcgactacatcttcttctccaagacccacatgagtgtcctgggcctgctggga
ccgctggacagccagtggctcatcgacaacaacatcaccggctgtccccacccccacatc
ccctcggaccacttctccctgctggcccagctggagctgcagcctcccctgccccatccg
ctcaaccccctcaacgggctgcacctgccggtccacaggtag
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