Siniperca chuatsi (mandarin fish): 122879614
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Entry
122879614 CDS
T08948
Name
(RefSeq) NACHT, LRR and PYD domains-containing protein 12-like isoform X1
KO
K22614
NLR family CARD domain-containing protein 3
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
schu04054
]
122879614
Pattern recognition receptors [BR:
schu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122879614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
NLRC4_HD2
FISNA
NACHT
LRR_1
LRR_4
NOD2_WH
PRY
LRR_8
SPRY
Motif
Other DBs
NCBI-GeneID:
122879614
NCBI-ProteinID:
XP_044059901
LinkDB
All DBs
Position
LG1:complement(1293485..1316611)
Genome browser
AA seq
1582 aa
AA seq
DB search
MDQSEGREEGVPPSKTTLCGEHEAQSPEQQQQRPDSPEPGPGPGPGRSCVSMKSARSMTP
PPDFKSHDCETEIKQQKLDSPEHSCVSVRSDQSKESPLLFKDGQSAYPRDQQKNSKIPSD
QPVQQHQTDLDSIFMLLEENIVTFVKSELKRVQKVLSPDYPECLESQREDDEVLDGEDKE
QRRRSREAFLKITLHFLRRMNQEKLADCLQSGTHAAVCQRKLRSNLKKKFQCVFEGIPKA
GNPTPLNQIYTELYITEGGTGEVNHEHEVRQIETACRKSDRPETTIKKEDIFKPSPGRDE
PVRTVMTKGVAGIGKTVLTQKFTLDWAEDKANQDIHFTFPFTFRELNVLKEEKYSLVELV
HHFFTETKEAGICRFEEFQVVFIFDGLDECRLPLDFQRNEILTDVTKSTSVDVLLTNLIR
GKLLPSARLWITTRPAAANQIPPECVDMVTEVRGFTDLQKEDYFRQRFRDEEQASRIISH
IKTSRSLHIMCHIPVFCWITATVLEEVLKTREGGELPKTLTEMYIHFLVVQSKLKNIKYD
GGAETDPQWNEKSRKMIESLGKLAFEQLQKGNLIFYESDLTECGIDIRAASLYSGVFTQI
FKEERGLYQDKVFCFVHLSVQEFLAALHVHLTFVNSGVNLMAEEQTTSWWSEVFGGKSTH
FYESAVDMALQSPNGHLDLFLRFLLGLSLETNQSLLRGLLTQIESSSQTKKKTCQYIKKK
ISENLSAEKSINLFHCLNELNDRSLVEEIQHYLNSGSLSTDKLSPTQWSALVFILLSSEK
DLDVFDLNKYSASEEALLKLLSVVQDSNKALLSGCNLSQRSCGALSSVLSSQPSSLRELD
LSNNNLQDSGWKLLSAGLKSPHCTLAILRLSGCNLSERSCEALSSVLSSNSSLRELDLSN
NDLQDAGVKLLSAGLGSPHCRLDTLRLIGCKLSERSSEALSSVFSFKPSSLRELDLSNNN
LQDSGVRLLSSGLQSLHCRLAILRLSGCKLSERSSEALSSVLSFQSSSLRELDLSNNCLQ
DSGMELLSAGLKSPYCTLEILRLIGCKLSERSCEALSSVFSFKPSSLRELDLSNNNLQDS
GVRLLSSGLQSLHCRLDILRLSGCKLSQRSCEALSSVLSSQSSSLRELDLSNNGLQDSGM
ELLSAGLESPYCTLEILRLIGCKLSQRSCEALSSVFSFKPSSLRELDLSNNNLQDSGVRL
LSSGLQSLHCRLDILRLTGCKLSKGSCEALSSVFSFQSSSLKELDLSNNDLQDSGVKLLS
AGLESPHCTLETLSLSLCRVTEKGCASLASALSSNPSHLRELDLSYNHPGDSGVKLLSAG
LEDPQWRLDTLRMDHGGQQRLKPGVRKYACELELDTNTPNGELRLSDNNRKATCVDEDQS
YPHHPDRFDWPQLMCTNGLTGRCYWEVEYRGRVEIAVTYRGIGRRGDSKDCLFGKNDQSW
SLSCSDGRYSVWHNNTRKSIFPLLKSLPIILIFLYLLLKLPQLLLLLPLLLFHHDCPSFS
FSCSFFYSFFSFLFSFLLSSSSSTDSHRVAVYVDCPAGTLSFYRLCFGRLIHLHTFNTTF
TEPLYPGFRFWSPGSSVSLCPL
NT seq
4749 nt
NT seq
+upstream
nt +downstream
nt
atggatcagagtgagggcagagaggagggagtccctccctctaaaaccactctgtgtggg
gaacatgaagctcagagcccagagcagcagcagcagagaccagactctcctgaacctgga
cctggacctggacccggacgcagctgcgtttctatgaagagtgcccggtccatgactcct
ccacctgattttaagagccatgattgtgagacagaaatcaagcagcagaaactggactct
cctgaacacagctgtgtatcagtgaggagtgaccagtccaaggaatcccctcttcttttt
aaagatggacaatctgcttatccaagagatcagcagaagaactcaaagattcccagtgat
cagcctgtccagcagcatcaaacagacctggactccatatttatgctgctggaggagaac
attgtcacttttgtgaagagtgagctgaagagagtccagaaggttctgagtccagattat
ccagaatgcttagagagtcagagggaggatgatgaggtgttggacggtgaggataaagag
cagagaaggaggagcagagaggcatttttgaagatcacactgcacttcctgaggagaatg
aatcaggaaaagctggctgactgtctacagagcggaactcatgctgcagtgtgccaacgt
aaactcaggtctaacctgaagaagaagttccagtgtgtttttgaggggattcctaaagca
ggaaacccaacccctctgaatcagatctacacagagctctacatcacagagggagggact
ggagaggtcaatcatgaacatgaggtcagacagattgaaacagcatgcaggaaatcagac
agaccagaaacaacaatcaaaaaagaagacatctttaaaccctcacctggaagagatgaa
ccagtgagaacagtgatgacaaagggagtggctggcatcgggaaaacagtcttaacgcag
aagttcactctggactgggctgaagacaaagccaaccaggacatacacttcacatttcca
ttcactttcagagagctgaatgtgctgaaagaggaaaagtacagcttggtggaacttgtt
catcacttctttactgaaaccaaagaagcaggaatctgcaggtttgaagagttccaggtt
gtgttcatctttgacggtctggatgagtgtcgacttcctctggacttccagaggaatgag
atcctgactgatgttacaaagtccacctcagtggacgtgctgctgacaaacctcattagg
gggaaactgcttccctctgctcgcctctggataaccacacgacctgcagcagccaatcag
atccctcctgagtgtgttgacatggtgacagaggtcagagggttcactgacctacagaag
gaggactacttcaggcagagattcagagatgaggaacaggccagcagaatcatctcccac
atcaagacatcgcgaagcctccacatcatgtgccacatcccagtcttctgctggatcact
gctacagttctggaggaggtgttgaagaccagagagggaggagagctgcccaagaccctg
actgagatgtacatccacttcctggtggttcagtccaaactgaagaacatcaagtatgat
ggaggagcggagacagatccacagtggaatgaaaagagcaggaagatgattgagtctctg
ggaaaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctg
acagagtgtggcatcgatatcagagcagcctcattgtactcaggagtgttcacacagatc
tttaaagaggaaagagggctgtaccaggacaaggtgttctgcttcgtacatctgagcgtt
caggagtttctggctgctcttcatgtccatctgacattcgtgaactctggtgtcaatctg
atggcagaagaacaaacaacatcctggtggtctgaagtgtttggaggcaaatcaacacat
ttttatgagagtgctgtggatatggccttacagagtccaaacggacacctcgacttgttc
ctccgcttcctccttggtctttcactagagaccaatcagagtctcctacgtggcctgctg
acacagatagaaagtagctcacagaccaaaaagaaaacatgccagtacattaaaaagaag
atcagtgagaatttgtctgcagagaaaagcatcaatctgttccactgtctgaatgaattg
aatgaccgttctctagtggaggagatccaacattacctgaattcaggaagtctctccaca
gataaactctctcctactcagtggtcggctctggttttcatcttactgtcatcagaaaaa
gatctagatgtgtttgacctgaacaaatactctgcttcagaggaggctcttctgaagctg
ctgtcagtggtccaagactccaacaaagctctgctgagtggctgtaacctctcacagaga
agctgtggagctctatcctcagtgctcagctcccagccctctagtctgagagagctggat
ctgagtaacaacaacctgcaagattcaggatggaagctgctgtctgctggactgaagagt
ccacactgtacactggcaattctcaggttgagtggctgtaacctctctgagagaagctgt
gaagctctctcttcagttctcagctctaactctagtctgagagagctggacctgagtaac
aacgacctgcaagatgcaggagtgaagctgttgtctgctggactggggagtccacactgc
agactggatactctcaggctgattggctgtaaactatcagagagaagctctgaagctctg
tcctcagttttcagcttcaaaccctctagtctgagagagctggacctgagtaacaacaac
ctgcaggattcaggagtgaggctactgtcttctggactacagagtctccactgcagactg
gcaattctcaggctgtctggctgtaagctgtcagagagaagctctgaagctctgtcttca
gttctcagcttccagtcctctagtctgagagagctggacctgagtaacaactgcctgcag
gattcaggaatggaactgttgtctgctggactgaagagtccatactgtacactggaaatt
ctcaggctgattggctgtaaactatcagagagaagctgtgaagctctgtcctcagttttc
agcttcaaaccctctagtctgagagagctggacctgagtaacaacaacctgcaggattca
ggagtgaggctgctgtcttctggactacagagtctccactgcagactggatattctcagg
ctgtctggctgtaagctgtcacagagaagctgtgaagctctgtcttcagttctcagctcc
cagtcctctagtctgagagagctggacctgagtaacaatggcctgcaggattcaggaatg
gaactgttgtctgctggattggagagtccatattgtacactggaaattctcaggctaatt
ggctgtaaactgtcacagagaagctgtgaagctctgtcctcagttttcagcttcaaaccc
tctagtctgagagagctggacctgagtaacaacaacctgcaggattcaggagtgaggctg
ctgtcttctggactacagagtctccactgcagactggatattctcaggctgactggctgt
aaactgtcaaagggaagctgtgaagctctgtcttcagttttcagcttccagtcctctagt
ctgaaagagctggacctgagtaacaatgacctccaggattcaggagtgaagctgctttca
gctggactggagagtccacactgcacactggaaactctcagtctgtcactctgtagggtc
acagagaaaggctgtgcttctctggcctcagctctgagctccaacccctcccatctgaga
gagctggacctgagctacaatcatccaggagactcaggagtgaagctgctgtctgctgga
ctggaggatccccaatggagactggacactctcaggatggaccatggtggacagcagaga
ctgaaacctggtgtgaggaagtacgcctgtgaactggagctggacacaaacacaccaaac
ggagagctcagactgtctgacaacaacaggaaggcgacatgtgtggacgaggatcagtca
tatcctcatcatccagacagatttgactggcctcagctgatgtgtacaaatggtctgact
ggtcgctgttactgggaggtcgagtacagaggaagagttgaaatagctgtaacttacaga
ggaatcggaaggagaggagacagtaaagactgtttgtttggaaagaatgatcagtcctgg
agtctgagctgctctgatggtcgttactctgtgtggcacaataacacaagaaaatccata
ttccccctcctcaaaagcctcccgatcatcctcatcttcctttatctcctcctcaaactg
ccccaacttcttctcctcctccccctcctcctcttccatcatgattgcccctccttctca
ttctcctgctccttcttctactctttcttctccttcctcttctcctttctcctctcctcc
tcctcttctactgactctcacagagtagcagtgtatgtggactgtcctgctggcactctg
tccttctacagactctgctttggcagattgatccacctccacaccttcaacaccacattc
accgaacctctttatcctgggttcaggttctggtcacctggttcctcagtgtctctgtgt
cctctgtag
DBGET
integrated database retrieval system
