Streptomyces collinus: B446_04080
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Entry
B446_04080 CDS
T02787
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sci
Streptomyces collinus
Pathway
sci03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B446_04080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sci03400
]
B446_04080
Enzymes [BR:
sci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B446_04080
DNA repair and recombination proteins [BR:
sci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B446_04080
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AGS67644
UniProt:
S5UX75
LinkDB
All DBs
Position
1006774..1007757
Genome browser
AA seq
327 aa
AA seq
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MTPVTLPFIPPMLATPGSLPTAAQDERWAYETKQDGQRVMVYLPGDGTVLLRARSGEDIT
AAYPELRPLGGALGGTAAVLDGEVLALDARGRADFQLLQSRMGLAHAPARAARRAAQVPV
HLVLFDAPYVAEPLLRLPYTRRRARLEELGLAGPHWSTPAAVTGHGAEALRATREHGLEG
VVCKRLDSVYEPGVRSRAWIKIRNMRSEDVIVGGWLPGKGRLAGLPGAVLVGQRAGGRLR
YVGGVGTGWSTAERADLAALLAAAATGTCPFDPVPRIPEARWVLPRLVGEVSYSTRTRDG
MLRQPSWQRLRPDLTPRESAADLPEDP
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
gtgacccccgtgacgctgccgttcatcccgccgatgctcgccacccccggctcgctgccg
accgccgcgcaggacgagcggtgggcgtacgagaccaagcaggacggccagcgggtgatg
gtgtacctgcccggcgacggcaccgtgctgctgcgcgcccgctccggggaggacatcacc
gccgcctatcccgaactccggccgctcggcggcgcgctgggcggcaccgccgcagtgctg
gacggcgaggtgctggccctggacgcgcggggccgggcggacttccagttgctgcagagc
cggatgggtctcgcgcacgccccggcccgcgcggcgcgccgggccgcccaggtgccggtc
cacttggtgctgttcgacgcgccctacgtcgcggagccgctgctccggctcccctacacc
cggcggcgggcccggctggaggaactggggctcgcgggcccgcactggtccacgccggcc
gcggtgaccgggcacggcgccgaggcgctgcgcgccacccgggagcacgggctggaaggg
gtggtgtgcaagcggctggactcggtgtacgagcccggcgtgcgctcccgcgcctggatc
aagatccgcaacatgcgcagcgaggacgtgatcgtcggcggctggctgccgggcaaggga
cggctggccggtctgcccggcgcggtgctggtcggccagcgcgcgggcggccggctgcgc
tacgtcggcggcgtgggcaccggctggagcaccgcggaacgggccgatctggccgccctg
ctggccgccgcggccaccggtacctgccccttcgatcccgtgcccaggatcccggaggcg
cgctgggtgctgccccggctggtcggcgaggtcagctactccacccggaccagagacggg
atgctgcgccagccgtcctggcagcggctgcgtccggacctcaccccgcgggagtcggcg
gcggacctgcccgaggacccctga
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integrated database retrieval system