Streptomyces collinus: B446_24985
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Entry
B446_24985 CDS
T02787
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sci
Streptomyces collinus
Pathway
sci03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B446_24985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sci03400
]
B446_24985
Enzymes [BR:
sci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B446_24985
DNA repair and recombination proteins [BR:
sci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B446_24985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
AGS71808
UniProt:
S5UX45
LinkDB
All DBs
Position
complement(5739003..5739848)
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AA seq
281 aa
AA seq
DB search
MLSNLDKVLYPETGFTKGELVHYYATTAAVLLPHLRDRAMSFLRFPDGPDGQRFFAKNVP
PGTPEWVTTAEVPRSEGPARMVVVQDLASLVWAANLVTEFHTHQWLVQSPEEADRLVFDL
DPGAPATIVDCCEVALWLRERLAADGIEAYAKTAGSKGLHLLAAVRGASSERTSEYAKQL
AVEAERAMPRLVVHRMTKSLRPGKVFVDWSQNAARKTTAAPYTLRARPAPLVSAPVRWAE
VEECREPGTLEFLAGDVASRVQQHGDLLAPLLDAGRSVPLP
NT seq
846 nt
NT seq
+upstream
nt +downstream
nt
gtgctcagcaacctggacaaggtgctgtatccggagacgggcttcaccaagggcgagctg
gtgcactactacgcgaccaccgccgccgtgctgctgccgcacctgcgcgaccgcgcgatg
tccttcctgcgcttccccgacgggccggacgggcagcggttcttcgccaagaacgtgccg
ccgggtacgcccgagtgggtcacgaccgccgaggtcccccggtccgagggcccggcccgg
atggtggtcgtacaggatctggcgagcctggtctgggcggcgaacctggtgaccgagttc
cacacgcaccagtggctggtgcagtcgcccgaggaggccgaccggctggtgttcgacctg
gacccgggggcgcccgcgacgatcgtcgactgctgcgaggtcgccctgtggctgcgggag
cggctggccgcggacgggatcgaggcgtacgccaagacggccgggtccaaggggctgcac
ctgctggcggccgtgcgcggggcgtcgtccgagcggacgagcgagtacgcgaagcagctc
gcggtggaggccgagcgggcgatgccccggctcgtggtgcaccggatgacgaagagcctc
aggccggggaaggtgttcgtcgactggagccagaacgcggcgcgcaagacgacggcggcg
ccgtacacgctgcgggcccggccggccccgctggtgtcggctccggtgcggtgggcggag
gtcgaggagtgccgggagccggggacgctggagttcctggccggggacgtcgcgtcccgg
gtgcaacagcacggggatctgctggctccgctgctggacgccgggcggtcggtgccgctg
ccctga
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