Styela clava (leathery sea squirt): 120328994
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Entry
120328994 CDS
T07291
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sclv
Styela clava (leathery sea squirt)
Pathway
sclv04512
ECM-receptor interaction
sclv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sclv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120328994
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120328994
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sclv04147
]
120328994
00536 Glycosaminoglycan binding proteins [BR:
sclv00536
]
120328994
Exosome [BR:
sclv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120328994
Glycosaminoglycan binding proteins [BR:
sclv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120328994
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120328994
NCBI-ProteinID:
XP_039251527
LinkDB
All DBs
Position
Unknown
AA seq
1779 aa
AA seq
DB search
MALGKPQTTFLILAIFFIFSTQIEAKGKYRGGECGTKMYCNATKGERGIPGLVGLVGPPG
LPGFPGPEGAIGQRGERGEFGEAGATGPKGSRGVRGYPGHPGAHGANGINGLHGTRGPPG
LPGCNGTKGETGPRGPSGLPGLNGEVGFSGSKGDKGQPGEVLNRVPGKKGEPGRPGLEGP
SGIPGETGPVGPRGFIGNPGPPGPPGNDGPRGDKGQMGLGFQGTKGEKGDRGDQGKSGQP
IEVPHTGAATGDETPIDGFRGEPGDPGPRGPAGSKGMRGDTGPSGEQGLTGMKGPKGEKG
EYGPPGPQSTKIGKPGIPGINGYDGESGERGTPGRPGRSGRTGDKGEPGSVGPPGPPGTS
GLNGIAGPPGSPGVPGNVGPKGYRGFDGINGQPGAKGEAGFPGETGEEGPVGLPGVGLPG
RPGQDGLPGKPGAVGNSGTPGRPGEKGDAGLTGLTVRGPPGDDGLPGRPGVTGPPGSPGP
VGTRGRDYIITEEDMSNMVTPGKPGLPGPPGPAGSPGQPGASGRTGPHGPKGEECGLCPV
GPKGEPGISGLSGLPGSAGIDGTVGKPGTPGEKGLGGISGLPGRQGSRGPEGFPGVEGSK
GEPGESTIIEIKGEKGSPGPSGIAGEPGRNGLPGRDGFDGPMGEKGIRGEVGPPGSMGYM
GEQGGRGLPGLPGRDGQSLPGETGSKGAKGEEGMNGLPGLPGQLGPKGEPAASRIITGEQ
GEPGDSGRPGLPGRVGATGERGPPGLEGRAGLPGEKGQSGPPGLPGLNTRGLPGEKGYSG
MSGLPGRSGYNGTRGLPGQRGSIGMKGSQGEPGIGLPGLTGYPGEDGEPGLPGMQGEQGL
PGLSGINGLPGRDGSPGRQGVRGNIGPPGPAGAKGEIGEGRPGPAGPEGQRGLPGLTGAT
GLQGPRGDPGPPGRDMVGQRGDDGDEGLPGVRGESGDQGEPGIPGLGGLPGGRGEKGNTG
PPGRPGPLGLPGTEGPVGPPGDPGLQGEIGADGIPGLPGLQGEVGPTGPKGDMGTKGEPA
TLDDNSSLTAKGTKGTKGEPGLWGLSGPPGQDGPEGQKGRAGPPGAKGMTGLAGIGIPGR
PGRDGRHGTPGQKGDTGPAGFIGGRGPKGMQGLPGINGRQGPPGPVGRPGEDSIVAGEPG
KSGLPGKDGLDGIPGLSGDDGEPGLPGRQGEIGPPGPKGSGGVTGFPGVRGEKGEAGPPG
PGGLPGLGGRDGPPGPAGERGPKGSIGQPGYAGRDGSPGRNGAAGEPGESVAGPPGPAGR
VGITGPKGEVGPVGLVGRDGPIGEKGERGFPGSEGQRGLPGLIGQRGLSVKGESGSPGLP
GRSGPKGSPGAAGIVGLPGQLGIKGEVGEKGLPGFNGLAGQEGPKGVTGPRGLPGLRGFP
GEKGSQGDVGLIGYPGRVGESGEPGLPGLNGREGRKGDKGVIGPAGSDAAPIIRDGPEGQ
IGDTGPEGLAGPPGPRGPSGPIGNTGSKGEPGFDGLDGRPGTPGDRGEPGRQGPVGFTGP
AGRDGRPGVPGQPGDSGISILNHGYFLTRHSQTADVPECPTGMLRMWAGYSLLFLQGNER
AHGQDLGQAGSCMRRFSPMPFLFCNVNDNCRVASRNDYSYWLSTPEPFPMSMVAVTDGDI
EPYISRCAVCEAPSLTLAVHSQSDIVPDCPDNWESLWIGYSFVMHTAAGAEGSGQSLQSP
GSCLEDFRAAPFIECHGRGTCNQYANGYSFWLATISRDQQFKKPVSETLKAGDLRQRISR
CVVCMRTHTGNDSPTIVRPPIRPQPPRGPTTGFFDEELP
NT seq
5340 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgggaaagcctcaaacaacatttttaatacttgccatcttcttcatattttct
acgcaaatcgaagctaaaggaaagtatcgtggcggagaatgtggaaccaagatgtactgc
aatgcaactaaaggagaaaggggtatacctggtctcgtaggattggttggaccaccaggg
ttgccaggttttccaggaccagaaggtgcaattggacaacgaggagaacgaggtgaattc
ggagaagcaggagctacaggaccaaaaggatccaggggtgtgagaggataccccggacat
ccaggagcgcatggagctaatggtatcaatggtttacatggaactcgtggcccaccgggt
ttgccaggatgtaacggaactaagggtgaaactggacctcgtggaccaagtgggttgcca
ggtttgaatggagaagttggattttcaggatctaagggtgacaagggtcaacctggtgaa
gttttaaacagagttcccggaaagaaaggtgaaccaggaagacctgggttggaaggtcct
tcgggtatcccaggagaaactggaccagtcggaccaagaggttttattgggaatccaggc
ccacctggccctcctggaaatgatggacccaggggagacaagggtcagatgggtcttgga
ttccaaggcacaaaaggagaaaagggcgatcgaggtgaccaaggcaagagcggacaaccc
attgaagttccccatacaggagcagctacaggggacgaaacacctatagacggtttccgc
ggtgaaccaggagacccaggaccaaggggaccagcaggttcaaagggaatgcgtggcgat
actggaccatctggagaacagggtttgacaggaatgaaaggaccaaaaggagaaaagggc
gaatacggacctccaggacctcagagtacgaaaattggaaaacctggaattccgggaata
aacggttatgacggtgaatccggagaacgtggtacccctgggcgtccaggccgatcagga
cgtacaggagacaaaggagagccaggttcagttggaccgccaggcccacctggaacatca
ggacttaacggaattgcaggacccccaggatcaccgggagtaccaggtaacgttggccca
aaaggttatcggggatttgatggaataaacggacaacccggagcaaaaggagaagctgga
tttccaggagaaactggagaagaaggacctgttggattgccaggtgttgggcttcctggt
agaccaggacaagatgggttgcctggaaaacctggtgctgttggtaattctggtactcct
ggcagacccggtgaaaaaggagacgctggattgacaggactgacagttcgtggacctcct
ggtgacgatggtcttcctggacgcccaggagtcactggcccgccaggatcacctggccca
gtcggtacccgtggtagagattatatcattactgaagaggacatgtcgaacatggtcact
ccagggaaacctggtttaccgggacctcccggacccgctggaagcccaggacaacctggg
gcatctggacgtaccggaccgcatgggccaaaaggagaagaatgtgggctctgtcctgtt
ggtcctaaaggagaacctggaatctcaggtctatcgggtctccctggttctgcggggatt
gacggaaccgtaggaaagcctggaactcctggagaaaaaggattgggtggaatttctgga
ttgcctggaagacagggatcacgaggacccgaaggatttcctggagttgaaggatcaaaa
ggagagcccggagaaagcactataattgaaataaaaggagaaaagggaagtccaggtccc
agtggaatcgccggtgaaccaggaaggaatggtcttccaggaagggacggttttgatgga
ccaatgggcgaaaaaggaattcgcggagaggttgggccacccggtagtatggggtacatg
ggagaacaaggcggcagagggttgcctggtttacctggacgagatggacaaagtttgcct
ggagaaactggatctaaaggagcaaagggagaggaaggaatgaatggactaccaggattg
cctggtcaattaggaccaaaaggagagcctgctgcatcacgcataatcactggtgaacaa
ggagaaccaggagattccggacgaccaggattaccaggacgagttggtgctaccggagaa
agaggtccaccaggtttagaaggacgagcaggattaccaggcgagaaaggtcagagtggc
ccacctggattacccggtcttaataccagaggactaccaggtgaaaagggttacagtgga
atgtccggtcttcctggcagatctgggtacaatggaacaagaggtttgccaggtcaacga
gggtcgataggcatgaaaggctctcagggtgaaccaggaattggacttccaggtttaact
ggatatccaggagaagatggcgaaccaggtttaccaggaatgcaaggagaacaagggttg
ccaggtttgagcggaataaatggccttccaggacgcgatggatctcccggcagacaaggt
gtcagaggaaatattggacctccaggaccggctggtgctaaaggagaaatcggtgaagga
agaccagggccagccggacctgaaggacaaagaggattgccaggtcttactggtgcaact
gggcttcagggaccacgtggagaccccggacctccaggtcgagatatggtaggacagaga
ggtgacgatggggacgaaggcttaccaggggtcagaggtgaatctggtgatcaaggagaa
ccgggaataccaggacttggaggattaccaggtggtagaggcgagaaaggaaacactgga
ccaccaggacgacctggacctttaggattgccaggcactgaaggacctgttggaccacct
ggcgatccaggacttcaaggagaaattggtgctgatggaattcctggtcttccaggctta
cagggtgaagttggccccacgggtccaaaaggagacatggggacaaaaggagagcccgct
acattggatgataattctagcttgactgctaaaggaacgaaaggaaccaaaggtgaaccg
ggactttggggattatctggtcctcctggacaagatggcccagaaggacaaaaaggacgt
gctggcccccctggtgccaaaggcatgactggtcttgctggaatcggaattcctggacga
ccaggacgtgatggcagacacggaacccctggacagaaaggagatactggaccagctgga
tttattggtggacgtggtcctaaaggtatgcaaggtttaccaggcatcaatggacgacag
ggaccacctggaccagttggaagaccaggagaagatagcattgttgctggagaaccaggg
aaatcaggattaccaggaaaagacggtctcgatggaattcctggcctttctggcgacgat
ggcgaaccaggattaccgggacgtcaaggtgaaattggaccccccggaccaaaaggcagt
ggtggagtaacaggtttccctggtgttcgcggagaaaagggtgaagcgggaccaccggga
ccaggtggattgcctggtttgggaggaagagacggaccaccaggtccagccggcgaaaga
ggtccgaaaggttctataggacagccaggttacgctggaagagatggttcacccggtaga
aacggtgcggctggagaacctggggaatcagtagctggaccaccgggaccagctgggcgg
gttggcataaccggaccaaagggtgaagttggaccagttggacttgtgggaagagacgga
ccgataggagaaaaaggcgaacgtggatttccgggatctgaaggacaacgagggttgcca
ggtttgatcggacagcgaggtttgtctgtcaagggtgaatccggtagcccaggattgcca
ggaagaagcggtccaaaaggttcccctggtgcagctggtattgtcggattgcctggtcaa
ctcggtatcaaaggagaagtgggagagaaaggtttgcctggtttcaatggcttggcaggc
caagagggaccgaagggagttactggacctcgaggtcttcctggtcttcgtggtttccca
ggggaaaagggaagtcagggcgatgtcggactaatcggatacccaggacgggtcggtgaa
tctggagaaccagggttgccaggtttgaatgggcgcgaaggcagaaaaggagacaaaggt
gtcatcggacctgctggaagcgatgcagcacctattattagagacggcccggaaggccaa
atcggagacacagggcctgaaggtttggcagggccacctggtcctcgcgggccatctggc
cccattggtaacaccggatcgaaaggagaacctggatttgatggattggatggacgccct
ggaacaccaggagatcgaggagagcccggaaggcagggtcctgttggtttcactggacca
gctggacgcgacggtcgaccaggagttccaggtcagcctggcgattcaggaatttctatt
cttaatcacggatattttttgacgaggcacagtcaaacagccgacgttccagaatgtcca
actggtatgctaagaatgtgggcaggatattctctcttattcttgcaaggaaatgagaga
gctcacgggcaagacttaggacaagctggttcatgcatgcgtcgattcagtccaatgccc
ttcttgttttgtaacgttaacgacaattgcagagtcgcatcaaggaacgattactcatat
tggctttcaacaccagaacctttcccgatgtctatggtggctgtaacagatggagacatt
gaaccgtacatcagcagatgcgctgtatgtgaagcaccttcactaacactcgctgtccat
agtcaatctgacatcgtaccggattgtcctgataactgggagagtctatggatcggatac
agctttgtaatgcacacagcagcaggcgcagaaggcagtggacaatcattgcaatctcca
ggttcttgtcttgaagacttcagagcggctccattcattgagtgccacgggagaggaact
tgcaaccaatatgcgaacggatacagcttctggttggctactatatcacgagatcaacaa
tttaaaaaacctgtctcagaaacgttaaaggcgggagatttgagacaacgaattagtcga
tgcgttgtttgcatgagaactcacactggtaacgattccccaacaatcgtacgtcctcca
ataaggccccaaccaccacgaggcccaacaacaggattctttgatgaagaacttccgtaa
DBGET
integrated database retrieval system
