Schizophyllum commune: SCHCO_02604934
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Entry
SCHCO_02604934 CDS
T01331
Symbol
SCHCODRAFT_02604934
Name
(RefSeq) uncharacterized protein
KO
K13126
polyadenylate-binding protein
Organism
scm
Schizophyllum commune
Pathway
scm03015
mRNA surveillance pathway
scm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SCHCO_02604934 (SCHCODRAFT_02604934)
09123 Folding, sorting and degradation
03018 RNA degradation
SCHCO_02604934 (SCHCODRAFT_02604934)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scm03019
]
SCHCO_02604934 (SCHCODRAFT_02604934)
03041 Spliceosome [BR:
scm03041
]
SCHCO_02604934 (SCHCODRAFT_02604934)
Messenger RNA biogenesis [BR:
scm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
SCHCO_02604934 (SCHCODRAFT_02604934)
mRNA cycle factors
Stress granule specific factors
SCHCO_02604934 (SCHCODRAFT_02604934)
Spliceosome [BR:
scm03041
]
Complex C
Other components
Complex C specific factors
SCHCO_02604934 (SCHCODRAFT_02604934)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
YflT
RRM_occluded
MARF1_RRM1
Motif
Other DBs
NCBI-GeneID:
9594639
NCBI-ProteinID:
XP_003036186
UniProt:
D8PTB2
LinkDB
All DBs
Position
Unknown
AA seq
632 aa
AA seq
DB search
MSVVAEAPPAAVAPEAAAPAPAPAPAPAAPAYSAPVSTGAGSPPSASLYVGELDPTVTEA
MLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSLIKNRPCRIM
WSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHGNSKGYGFVH
YETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDEMKAQFTNLYIKNIDPEVTD
EEFEALFREQGNVTSSVIQRDEEGRSRGFGFVNYETHEEAQKAVDNLNDKDFHGRKLFVS
RAQKKAEREEELRKAHEQARLEKLSKYQGLNLYVKNLDDDVDDEKLRAEFEPFGTITSAK
VMRDDKGVSKGFGFVCYSSPEEASKAVAEMNNKMIGSKPLYVSHAQRREVRRQQLESQIA
QRNQIMHQAAAGGMPGYMNGPMYYPPGPGYPPQGRGMMYGQPGMMPPRPRYPPAPANGQV
AGMPIPAPYGQAPPPQGYGGMYPGGGRGAPRGRGGPPARGVPAGRGGPPPAAAARPPPPP
GAVPPAAAAPQVPTLTAAQLAAVSPMEQKQMLGEVIYMRIAASHPDLAGKITGMLLEMDN
AELLSLLDSPDAMAGKVNEALSVLQEFVTKEA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttgtcgctgaagcccctcccgccgccgttgccccagaggcagctgcgcccgcc
cctgcccccgctcccgccccggcggcccccgcctactctgctcctgtcagcactggagct
ggctctcccccctcagccagtctctatgtgggtgagctcgacccgaccgtgacggaggcc
atgctcttcgagatcttcaatatgatcggccccgtggcgagcatccgcgtgtgccgtgac
gctgttacgcgccgctcccttggctacgcgtacgtcaactacctgaacgccgccgatggt
gagcgcgctctcgagcagctcaactactccctcatcaagaaccgtccctgccgcattatg
tggtcccagcgggaccctgccctgcgcaagactggccagggcaacatcttcatcaagaac
cttgacgaacagatcgacaacaaggcccttcatgacacgttcgctgctttcggcaacgtc
ctttcctgcaaggtcgcgaccgacgagcacggcaactccaagggctacggattcgttcac
tacgagaccgccgaggcagccgagaacgccatcaagaatgtcaacggcatgctcttgaac
gacaagaaggtctacgtcggtcatcacatctcccgcaaggagcgtcagtccaagattgac
gagatgaaggctcagttcaccaacctgtacatcaagaacattgacccggaggtcaccgac
gaggagtttgaggccctcttcagggagcagggcaacgtgacctcctccgtcatccagcgt
gacgaggagggcagaagcaggggcttcggcttcgtcaactacgagacgcacgaagaggcg
cagaaggccgtcgacaacttgaacgacaaggacttccacggcaggaagctcttcgtctcg
cgtgcgcagaagaaggccgagcgcgaggaggagctgcgcaaggcccatgagcaggctcgc
ctcgagaagctcagcaagtaccagggcttgaacctctacgtcaagaacctcgacgatgat
gtcgacgatgagaagcttcgtgccgagttcgagccgtttggcaccatcaccagcgccaag
gtcatgcgcgacgacaagggtgtctcgaagggcttcggcttcgtctgctactcgtcgcct
gaagaggccagcaaggctgtcgcggagatgaacaacaagatgatcggcagcaagcccctc
tacgtctcgcacgcccagcgccgcgaggtccgccgtcagcagctcgagagccagattgcc
cagcgtaaccagatcatgcaccaggctgccgctggaggcatgcccggttacatgaacggc
ccgatgtactaccctcctggccccggttaccctcctcaaggccgtggcatgatgtacggc
cagccgggtatgatgcccccgcgcccccgctaccctcctgcgccggccaacggccaggta
gcgggcatgcccatccctgcgccctacggccaggctcctcccccgcaggggtatggcggc
atgtaccccggtggtggtcgcggtgctcctcgcggccgtggcggtccccctgcccgcggc
gtccccgctggtcgcggtggcccgccccccgctgccgccgctcgcccgcctcccccgccg
ggtgccgtcccgcccgcggcggctgcgccccaggtcccgaccctcaccgccgcccagctt
gctgctgtgtcgcccatggagcagaagcagatgctcggcgaggtcatctacatgcgcatc
gctgcgtcgcaccccgacctggccggcaagatcaccggcatgctcctcgagatggacaac
gccgagctcctgtccctgctcgactcgcccgatgccatggccggcaaggtcaacgaggcg
ctctccgtcctccaggagttcgtgaccaaggaggcttga
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