Schizophyllum commune: SCHCO_02611948
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Entry
SCHCO_02611948 CDS
T01331
Symbol
SCHCODRAFT_02611948
Name
(RefSeq) DUF1740-domain-containing protein
KO
K26109
nuclear exosome regulator NRDE2
Organism
scm
Schizophyllum commune
Brite
KEGG Orthology (KO) [BR:
scm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scm03019
]
SCHCO_02611948 (SCHCODRAFT_02611948)
Messenger RNA biogenesis [BR:
scm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
SCHCO_02611948 (SCHCODRAFT_02611948)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
TPR_12
TPR_14
Motif
Other DBs
NCBI-GeneID:
9589899
NCBI-ProteinID:
XP_003038570
UniProt:
D8PPC5
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MSTAPTFSSFPDLDPQPSQSKAKNKPKEKAKKRHRSRSRSRDRERDKDRDRERKKDKDGK
KKKDKDRHRDDKRDKVYEEAYDVRKDERDAGLRYFYSDRRGDPLNITYGRIHSGDIPKYN
IYHRGRKILGLDSAWVAHRTGHGVEVFLRGPRKAPALTDARTRALLAQPPTQHITANPNK
YPEVDGVIVVPRRQRAAAEPEDSYRAITAADRARDDSDSSSEEDEGASEEEEDDGRPTLS
YHQEKLAQLNRQVTAEPANEHAWLELLRESLIDVPPDTKNASKARAEITTAILGRALTLN
PRALILRREYVKAGEEIWHESRVRAEWEAALKVGGPDMWMEWLEWRIGQAKDALAGIVED
AGRVLANTEDDMTRVRVLWRMAELLKSAGYIERANALFQAQAEWITHLPHTLKDLPFTQQ
LDELEEFWESEVPRIGEPNASGWASWVASGKPAPNHTPTASTSSRLPRPPTGDPYTRWAQ
SEQLADTYACLPTRSFDESEDADPYAVIMFSDIRPLLSPIRDEVAVDAFRKAWLSVLGLW
VPGNQARGEWDDRWACAHLGRTSYVKRIFQQYTTQTSVSADAVAGVLIGRELAYGDVFGP
VKGWGGRDVVRALEVNVRREKGKERAMLWRSEDVEDAREEVVRTVFAQMRKGQGDEEWDA
LALSFEVALGQWKSATRLSRTFLSSARDSLPHWCMHAQLERLRGRLDDARKVYNTVLIAS
RPANNEPGAAQLWSDWAEMEWLDGKPEEAINIIMKAANVEGQGGIAILRARRNLDEAIKT
APSSDRWKDREAWVKMLALFELLSAKALPAALAVFDAHAPASGLARESMAVAALMVIYRH
SIVLRTPTPPAILRERARAALDEFPSNSVVLAMVLEAEKGQAIAGYLRDLRGEGHQAKDV
TRRVMDVWVGGWNGRWQLEAERTRTGLTMAVERSRTKGCAMLWRLFIELELRSGDFQSAK
RLLYRAVRECPFAKELYMMAFDALRSAFSARELAELGDLMAERDIRMRRGLDEIEVVGAE
ESSSSESESDGGDRELEQQAREYRRLMPY
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacggcccccaccttctcctccttccccgaccttgacccgcaacccagtcagtcc
aaagcaaagaacaagccaaaggagaaggctaagaagcggcacaggagcaggagcaggagt
agggaccgtgaacgggacaaggacagggacagggagaggaagaaggataaggatggaaag
aagaagaaagacaaggatcggcatcgggacgacaaacgcgacaaagtctacgaggaagcc
tacgacgtccgcaaagatgagcgcgatgcgggtttgcgctatttctacagcgaccgccgc
ggagatcccctgaacatcacctatggccgcattcactctggcgacattccaaagtacaac
atctaccaccgcggtaggaagatactcggtctcgactctgcgtgggtcgcacatcgcacg
gggcacggcgtcgaggtgttcctccgtgggccgcgcaaagcgcctgcgttgacggatgct
cgtacacgcgcactgcttgcacaaccccctactcagcatatcactgcaaacccgaacaag
tatcccgaggttgacggtgtcatcgtcgtgccccggcgtcaacgcgctgccgccgaacca
gaagactcctaccgcgccatcactgccgcagaccgcgcccgcgatgactctgactcctcg
tcggaggaagatgaaggcgccagcgaggaggaagaggacgatggccgacccactctgtca
taccaccaagagaaactcgcgcagctcaaccgccaggtcaccgctgaacccgcaaacgag
cacgcctggctcgagctcttgcgagagtccctcattgacgttccacccgacaccaagaat
gcttcaaaagctcgagcagagattaccacagctatactcgggcgcgctctcacactgaac
ccccgagcgttgattctgcggagggaatacgtgaaggcgggcgaggagatctggcatgag
agccgggtgcgcgctgagtgggaagccgcgctgaaggtcggtgggcctgatatgtggatg
gagtggttggaatggcgcatagggcaggcgaaggatgctttggctggcattgtcgaagac
gctgggcgcgtgctggcgaacacggaagacgacatgacaagagtgagggttctgtggagg
atggcagaactgctcaaaagcgcaggctacatcgaacgtgctaatgctctgttccaagct
caagcagaatggatcacgcacctacctcatactctgaaagacctccccttcacccaacag
ctcgacgaactcgaagaattctgggaatctgaagtcccccgcatcggcgaacccaacgcc
tccggctgggcctcatgggtcgcatctggaaagcccgcgcccaatcatacccctaccgca
tcgacctcctcccgcctccctcgcccaccaactggcgacccctacacccgctgggcgcag
tcagaacagctcgccgatacctacgcttgtctccccactcgttccttcgacgagtcggag
gacgcagacccgtatgcggtgatcatgttctcggatatccggcccctgttgagtcctatc
cgggatgaagtcgcagtggatgcattcaggaaggcgtggctctcagtactaggcctgtgg
gtgccgggcaaccaggcaagaggagagtgggacgaccgatgggcgtgtgcgcatctcgga
cgcacaagctacgtcaagcgcatcttccagcagtacacgacgcagacgagcgtgagcgcg
gatgctgtggcgggcgtgctcatcggacgggagctggcgtacggcgacgtgtttggtccg
gtgaaaggttggggcgggcgagatgtcgtacgcgcattggaggtgaatgtgaggagggag
aaggggaaggagcgcgcgatgctttggcgaagtgaagatgtggaggatgcacgagaagag
gtggtgaggacggtgtttgcgcagatgaggaaggggcagggggacgaggaatgggatgca
ttggcgctaagctttgaggtagcgctggggcaatggaagagtgctacgagactctcgcgc
accttcctttcatcggcacgagattcactgccgcactggtgtatgcacgcccagctggaa
cgcttgcgaggccggctggacgacgcgcgcaaggtgtacaacaccgtcctcatcgcctcg
cgacccgccaacaacgagccaggcgcggcccagctgtggtccgactgggcagagatggaa
tggctggacggcaagccagaggaggcaatcaacatcatcatgaaggccgccaacgtcgaa
ggccagggaggcatcgctatccttcgcgcgaggcgcaatctcgatgaagccatcaagacc
gcaccctcttcggacagatggaaagaccgcgaggcgtgggtcaagatgctggcgctcttc
gaactgctgtctgcgaaggcgctcccagccgcgctcgccgtgttcgacgcccacgccccc
gcttccggcctcgcgcgagagagcatggccgtagccgccctcatggtgatctaccgacac
agtatcgtgttacggacgcccacgccgccagcgattcttcgggagcgtgcgcgtgccgcg
ctagacgagttcccgagcaacagcgtggtgctcgcgatggtgctcgaggcggagaagggg
caggcgattgcagggtacttgcgggaccttcgtggcgagggccaccaagcaaaggacgtc
actcgacgtgtcatggatgtgtgggtgggtggttggaatgggaggtggcagctcgaagcc
gagcggacacgcactggactgacgatggcggtagagagaagtcggacgaagggctgtgcc
atgttatggcgcctgtttattgagcttgagctgcgttctggcgatttccagagtgcgaaa
cgcctactttatcgcgccgtacgggaatgcccgtttgctaaagagctatacatgatggcc
tttgacgcgctccggtcggcgtttagtgcgagggagctagccgagctgggggatctcatg
gcggagcgggacatcaggatgcgacgagggctggacgagattgaggtggtgggcgcggag
gagagcagcagcagcgagtccgagtctgacgggggagatcgcgagctagaacaacaggct
cgcgagtaccgacggctgatgccctactga
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