KEGG   Streptomyces coelicolor: SCO1202Help
Entry
SCO1202           CDS       T00085                                 

Gene name
ligB
Definition
(RefSeq) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sco  Streptomyces coelicolor
Pathway
sco03030  DNA replication
sco03410  Base excision repair
sco03420  Nucleotide excision repair
sco03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sco00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    SCO1202 (ligB)
   03410 Base excision repair
    SCO1202 (ligB)
   03420 Nucleotide excision repair
    SCO1202 (ligB)
   03430 Mismatch repair
    SCO1202 (ligB)
Enzymes [BR:sco01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     SCO1202 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     SCO1202 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     SCO1202 (ligB)
DNA replication proteins [BR:sco03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    SCO1202 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     SCO1202 (ligB)
DNA repair and recombination proteins [BR:sco03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     SCO1202 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     SCO1202 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     SCO1202 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N RNA_ligase
Motif
Other DBs
NCBI-GeneID: 1096625
NCBI-ProteinID: NP_625491
Kitasato: SCO1202
UniProt: Q9FCB1
LinkDB All DBs
Position
1273700..1275238
Genome map
AA seq 512 aa AA seqDB search
MLLARLAQVSREVAATSARSRKTVLLAELFREAEAADVPVVIPYLAGRLPQGRIGVGWKV
LSRRVPPADAPTLTVRDVDARLTRLGAVSGAGSQAERTRLVGELMGAATEDEQRFLIGLL
TGEVRQGALDAAAVEGLAAATDAPPADVRRAVMLAGSLQTVAEALLADGPGALDRFRLTV
GQPVLPMLAHSASSVAEAVGKLGAAAVEEKLDGIRVQVHRDGGTVRIYTRTLDDITDRLP
EVTEAALALPGERFILDGEAISLDADGRPRSFQETAGRVGSRTDVATAARAVPVSAVFFD
VLSVDGRDLLDLPLTERHAELARLVPEPLRVRRTLVHGPEDTGAAEEFLARTLARGHEGV
VVKGLDAAYSAGRRGASWLKVKPVHTLDLVVLAAEWGHGRRTGKLSNLHLGARTADGSFA
MLGKTFKGMTDALLTWQTERLKELAVEEHGWGVTVRPELVVEIAYDGLQRSTRYPAGVTL
RFARVVRYREDKRPEDADTVDTLLAAHPGVAP
NT seq 1539 nt NT seq  +upstreamnt  +downstreamnt
atgctgcttgcccggttggcccaggtgtcccgggaggtcgcggccacgtcggcgcggtcc
cggaagaccgtcctgctcgcggagctgttccgtgaggcggaggcggcggacgtgccggtc
gtcatcccgtacctggcgggacggctcccgcagggccggatcggcgtcggctggaaggtg
ctgagccgccgcgtgccgcccgcggacgcaccgaccctgaccgtacgtgacgtggacgcc
cgcctcacccggctcggcgcggtctccggcgccggttcgcaggccgagcggacccggctg
gtcggcgagctgatgggcgccgccacggaggacgagcagcgcttcctgatcgggctgctc
accggggaggtccgccagggcgccctggacgcggccgccgtcgagggcctggccgcggcg
acggacgctcccccggcggacgtgcggcgggcggtgatgctcgcggggtcgctccagacc
gtggccgaagccctgctggccgacggacccggcgccctcgaccggttccggctcaccgtg
gggcagccggtgctgccgatgctggcgcacagcgcgtcctcggtcgccgaggcggtcggc
aaactgggcgccgccgcggtggaggagaagctggacggcatccgcgtccaggtgcaccgg
gacggcggcaccgtgcggatctacacccgcacgctggacgacatcaccgaccggctcccc
gaggtcaccgaggcggccctggcactgcccggcgagcggttcatcctggacggcgaggcg
atctccctcgacgcggacgggcgcccccgctccttccaggagaccgccggccgggtcggc
tcccgcaccgacgtggccacggccgcgcgggcggtcccggtctccgcggtcttcttcgac
gtactctccgtcgacggccgcgacctgctcgacctgccgctgaccgaacggcacgcggag
ctggcgcggctggtccccgagcccctgcgggtacggcgcactctggtgcacggccccgag
gacaccggtgcggcggaggagttcctcgcccggacgctggcgcgcgggcacgagggcgtc
gtcgtcaaggggctcgacgccgcctacagcgcgggacggcgcggcgcgtcctggctgaag
gtcaagccggtccacacgctcgacctggtggtgctggccgccgagtggggccacggccgc
cgcaccggcaagctctccaacctccacctgggcgcccgcaccgccgacggctccttcgcg
atgctcggcaagaccttcaagggcatgaccgacgcgctgctgacctggcagaccgagcgc
ctgaaggagctggccgtggaggagcacggctggggcgtgaccgtacgccccgagctcgtc
gtcgagatcgcctacgacggcctccagcgctccacccgctacccggccggcgtcaccctc
cgcttcgcgcgcgtggtccgctaccgcgaggacaagcgccccgaggacgcggacaccgtg
gacaccctgctcgccgcccaccccggggtggccccgtga

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