Streptomyces coralus: QU709_06975
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Entry
QU709_06975 CDS
T09650
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
scoa
Streptomyces coralus
Pathway
scoa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scoa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QU709_06975 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scoa03400
]
QU709_06975 (ligD)
Enzymes [BR:
scoa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QU709_06975 (ligD)
DNA repair and recombination proteins [BR:
scoa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QU709_06975 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WLW51110
LinkDB
All DBs
Position
complement(1549505..1550461)
Genome browser
AA seq
318 aa
AA seq
DB search
MSADDTRGAERTVRAGRHSVRIHRQDKVLFPGGSDGGGDGGAKEYTKGDLVDYYRSVAPF
MLPHLRGRPLMLERHPDGLDGPRFMQKNTPDTYPEWIHRVEVAKEGGTVCHTVCDDTATL
VYLADQAALTLHRWLSRVGRIERPDRMVFDLDPSGDDFGAVREAARLLGELLDELKLPSA
LMTTGSRGLHVIVPVNGHHDFDEVRSFARDVADTLVAGHPDTLTTAARKKERGDRLYLDV
QRNAYAQTAVVPFTVRAKPGAPVATPIDWAQLDDPDLDARRWTVADAVEQARTNPWAGVL
AKGRALGPARRRLNALMP
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcggacgacacccggggcgccgagcggaccgtccgggccggccggcacagcgtg
cggatccaccgccaggacaaggtcctcttccccggtggcagcgacggtggcggtgacggc
ggcgcgaaggagtacaccaagggcgacctggtcgactactaccggtccgtcgcccccttc
atgctgccgcacctgcgcggccgcccgctgatgctggagcggcaccccgacggcctcgac
ggcccccggttcatgcagaagaacaccccggacacctacccggagtggatccaccgggtc
gaggtcgccaaggagggcggcaccgtctgccacaccgtgtgcgacgacaccgccaccctg
gtgtacctggccgaccaggccgccctcactctgcaccgctggctgtcccgggtcggccgg
atcgagcggcccgaccgtatggtcttcgacctcgatcccagcggggacgacttcggcgcg
gtgcgcgaggcggcccggctgctgggggagctgctggacgagctgaagctgccctcggcc
ctgatgaccaccggctcccgcggcctgcatgtgatcgtcccggtcaacgggcaccacgat
ttcgacgaggtccgctccttcgcccgggacgtggccgacaccctcgtcgccgggcacccc
gacacgctcaccaccgccgcccgcaagaaggagcgcggcgaccggctctacctcgacgtg
cagcgcaacgcctacgcccagaccgccgtcgtgcccttcaccgtccgcgccaagccgggc
gctcccgtggccaccccgatcgactgggcccaactcgacgatccggacctcgacgcccgc
cgctggaccgtcgccgacgccgtcgagcaggcccgcaccaacccgtgggccggggtgctg
gccaaggggcgcgcgctgggcccggcgcggcggcgcctcaacgcgttgatgccctga
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